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Family Search for PF11879 (DUF3399)

PF11879.8 hits 19 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

XP_006710693 potassium voltage-gated channel subfamily D member 3 isoform X2 from Homo sapiens
Aligns to 442:544 / 636 (16.2%), covers 99.0% of PF11879, 152.1 bits

XP_006501818 potassium voltage-gated channel subfamily D member 3 isoform X1 from Mus musculus
Aligns to 442:563 / 655 (18.6%), covers 99.0% of PF11879, 146.7 bits

KCND3_HUMAN / Q9UK17 Potassium voltage-gated channel subfamily D member 3; Voltage-gated potassium channel subunit Kv4.3 from Homo sapiens (Human) (see 12 papers)
NP_004971 potassium voltage-gated channel subfamily D member 3 isoform 1 precursor from Homo sapiens
Aligns to 442:563 / 655 (18.6%), covers 99.0% of PF11879, 146.5 bits

KCND3_RAT / Q62897 Potassium voltage-gated channel subfamily D member 3; Voltage-gated potassium channel subunit Kv4.3 from Rattus norvegicus (Rat) (see 7 papers)
Aligns to 442:563 / 655 (18.6%), covers 99.0% of PF11879, 146.2 bits

NP_001257891 potassium voltage-gated channel subfamily D member 3 isoform 1 precursor from Rattus norvegicus
Aligns to 442:563 / 655 (18.6%), covers 99.0% of PF11879, 146.2 bits

KCND3_RABIT / Q9TTT5 Potassium voltage-gated channel subfamily D member 3; Voltage-gated potassium channel subunit Kv4.3 from Oryctolagus cuniculus (Rabbit) (see paper)
Aligns to 442:563 / 655 (18.6%), covers 99.0% of PF11879, 145.7 bits

XP_005630924 potassium voltage-gated channel subfamily D member 3 isoform X1 from Canis lupus familiaris
Aligns to 442:563 / 679 (18.0%), covers 99.0% of PF11879, 144.7 bits

XP_018100233 potassium channel, voltage gated Shal related subfamily D, member 3 L homeolog isoform X1 from Xenopus laevis
Aligns to 442:563 / 653 (18.7%), covers 100.0% of PF11879, 141.5 bits

XP_015132111 potassium voltage-gated channel subfamily D member 2 isoform X1 from Gallus gallus
Aligns to 445:548 / 632 (16.5%), covers 99.0% of PF11879, 141.4 bits

KCND2_HUMAN / Q9NZV8 Potassium voltage-gated channel subfamily D member 2; Voltage-gated potassium channel subunit Kv4.2 from Homo sapiens (Human) (see 21 papers)
KCND2 / RF|NP_036413.1 potassium voltage-gated channel subfamily D member 2 from Homo sapiens (see paper)
NP_036413 potassium voltage-gated channel subfamily D member 2 precursor from Homo sapiens
Aligns to 445:546 / 630 (16.2%), covers 100.0% of PF11879, 140.9 bits

NP_113918 potassium voltage-gated channel subfamily D member 2 precursor from Rattus norvegicus
Aligns to 445:546 / 630 (16.2%), covers 100.0% of PF11879, 140.1 bits

KCND2_RABIT / P59995 Potassium voltage-gated channel subfamily D member 2; Voltage-gated potassium channel subunit Kv4.2 from Oryctolagus cuniculus (Rabbit) (see paper)
Aligns to 445:546 / 630 (16.2%), covers 100.0% of PF11879, 139.9 bits

KCND2_MOUSE / Q9Z0V2 Potassium voltage-gated channel subfamily D member 2; Voltage-gated potassium channel subunit Kv4.2 from Mus musculus (Mouse) (see 21 papers)
NP_062671 potassium voltage-gated channel subfamily D member 2 precursor from Mus musculus
Aligns to 445:546 / 630 (16.2%), covers 100.0% of PF11879, 139.9 bits

KCND2_RAT / Q63881 Potassium voltage-gated channel subfamily D member 2; RK5; Shal1; Voltage-gated potassium channel subunit Kv4.2 from Rattus norvegicus (Rat) (see 45 papers)
Aligns to 445:546 / 630 (16.2%), covers 100.0% of PF11879, 139.7 bits

KCND1_RABIT / P59994 Potassium voltage-gated channel subfamily D member 1; Voltage-gated potassium channel subunit Kv4.1 from Oryctolagus cuniculus (Rabbit) (see paper)
Aligns to 10:113 / 178 (58.4%), covers 100.0% of PF11879, 137.6 bits

KCND1_HUMAN / Q9NSA2 Potassium voltage-gated channel subfamily D member 1; Voltage-gated potassium channel subunit Kv4.1 from Homo sapiens (Human) (see paper)
NP_004970 potassium voltage-gated channel subfamily D member 1 precursor from Homo sapiens
XP_011542212 potassium voltage-gated channel subfamily D member 1 isoform X2 from Homo sapiens
Aligns to 447:550 / 647 (16.1%), covers 100.0% of PF11879, 132.3 bits

KCND1_MOUSE / Q03719 Potassium voltage-gated channel subfamily D member 1; Voltage-gated potassium channel subunit Kv4.1; mShal from Mus musculus (Mouse) (see paper)
NP_032449 potassium voltage-gated channel subfamily D member 1 precursor from Mus musculus
Aligns to 447:550 / 651 (16.0%), covers 100.0% of PF11879, 127.5 bits

KCNAL_DROME / P17971 Potassium voltage-gated channel protein Shal; Shaker cognate l; Shal2 from Drosophila melanogaster (Fruit fly) (see paper)
NP_001097646 shaker cognate l, isoform B from Drosophila melanogaster
Aligns to 445:552 / 571 (18.9%), covers 76.9% of PF11879, 64.1 bits

Shal / GB|ABC86265.1 potassium voltage-gated channel protein Shal from Drosophila melanogaster (see paper)
Aligns to 445:490 / 490 (9.4%), covers 33.7% of PF11879, 35.3 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory