PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF11935 (DUF3453)

PF11935.8 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PTA1_YEAST / Q01329 Pre-tRNA-processing protein PTA1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
YAL043C Pta1p (RefSeq) from Saccharomyces cerevisiae
NP_009356 RNA-processing protein PTA1 from Saccharomyces cerevisiae S288C
Aligns to 91:333 / 785 (31.0%), covers 100.0% of PF11935, 209.3 bits

SYMPK_HUMAN / Q92797 Symplekin from Homo sapiens (Human) (see 7 papers)
NP_004810 symplekin from Homo sapiens
Aligns to 122:348 / 1274 (17.8%), covers 98.7% of PF11935, 191.3 bits

NP_001319093 symplekin from Arabidopsis thaliana
Aligns to 100:327 / 1325 (17.2%), covers 97.3% of PF11935, 190.0 bits

SYMPK_XENLA / Q7ZYV9 Symplekin from Xenopus laevis (African clawed frog) (see 2 papers)
XP_018087329 symplekin isoform X1 from Xenopus laevis
Aligns to 112:340 / 1202 (19.1%), covers 96.9% of PF11935, 184.5 bits

SYMPK_DROME / Q8MSU4 Symplekin from Drosophila melanogaster (Fruit fly) (see 3 papers)
NP_649580 symplekin from Drosophila melanogaster
Aligns to 116:343 / 1165 (19.6%), covers 96.9% of PF11935, 183.2 bits

orf19.7041 putative uncharacterized protein CaJ7.0091 from Candida albicans (see paper)
Aligns to 96:345 / 764 (32.7%), covers 93.8% of PF11935, 162.6 bits

PTA1_SCHPO / Q10222 mRNA cleavage and polyadenylation specificity factor complex subunit pta1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 2 papers)
pta1 / RF|NP_594351.2 mRNA cleavage and polyadenylation specificity factor complex subunit Pta1 from Schizosaccharomyces pombe (see 2 papers)
Aligns to 86:308 / 670 (33.3%), covers 90.7% of PF11935, 151.8 bits

AT5G01400 ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding (RefSeq) from Arabidopsis thaliana
Aligns to 96:311 / 1467 (14.7%), covers 86.7% of PF11935, 140.3 bits

AT1G27590 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 100:252 / 264 (58.0%), covers 59.3% of PF11935, 117.7 bits

AT1G27570 phosphatidylinositol 3- and 4-kinase family protein (RefSeq) from Arabidopsis thaliana
Aligns to 100:289 / 649 (29.3%), covers 68.6% of PF11935, 95.1 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory