PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF11938 (DUF3456)

PF11938.8 hits 23 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CNPY4_MOUSE / Q8BQ47 Protein canopy homolog 4; Protein associated with Tlr4 from Mus musculus (Mouse) (see paper)
Aligns to 43:202 / 245 (65.3%), covers 98.1% of PF11938, 164.6 bits

CNPY4_DANRE / Q2L6K8 Protein canopy 4 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
Aligns to 26:185 / 217 (73.7%), covers 100.0% of PF11938, 164.0 bits

CNPY4_HUMAN / Q8N129 Protein canopy homolog 4 from Homo sapiens (Human) (see paper)
NP_689968 protein canopy homolog 4 precursor from Homo sapiens
Aligns to 37:196 / 248 (64.5%), covers 97.4% of PF11938, 163.0 bits

CNPY3_MOUSE / Q9DAU1 Protein canopy homolog 3; Protein associated with Tlr4; Trinucleotide repeat-containing gene 5 protein from Mus musculus (Mouse) (see 6 papers)
Aligns to 48:206 / 276 (57.6%), covers 98.1% of PF11938, 158.8 bits

CNPY3_HUMAN / Q9BT09 Protein canopy homolog 3; CTG repeat protein 4a; Expanded repeat-domain protein CAG/CTG 5; Protein associated with TLR4; Trinucleotide repeat-containing gene 5 protein from Homo sapiens (Human) (see paper)
Aligns to 48:206 / 278 (57.2%), covers 98.1% of PF11938, 158.0 bits

CNPY3_DANRE / A3KNS2 Protein canopy homolog 3; Trinucleotide repeat-containing gene 5 protein from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
Aligns to 31:190 / 276 (58.0%), covers 97.4% of PF11938, 156.0 bits

XP_006513965 protein canopy homolog 2 isoform X1 from Mus musculus
Aligns to 27:171 / 182 (79.7%), covers 100.0% of PF11938, 145.1 bits

CNPY2_HUMAN / Q9Y2B0 Protein canopy homolog 2; MIR-interacting saposin-like protein; Putative secreted protein Zsig9; Transmembrane protein 4 from Homo sapiens (Human) (see paper)
NP_055070 protein canopy homolog 2 isoform 1 precursor from Homo sapiens
Aligns to 27:171 / 182 (79.7%), covers 100.0% of PF11938, 144.3 bits

CNPY1_DANRE / Q2L6L1 Protein canopy-1; Protein D121 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
NP_001034586 protein canopy-1 precursor from Danio rerio
Aligns to 31:177 / 187 (78.6%), covers 100.0% of PF11938, 142.8 bits

NP_001305771 protein canopy homolog 3 isoform 3 precursor from Homo sapiens
Aligns to 48:239 / 311 (61.7%), covers 98.1% of PF11938, 140.0 bits

AT1G42480 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 24:163 / 182 (76.9%), covers 100.0% of PF11938, 116.5 bits

SEELE_DROME / Q7JXF7 Protein seele from Drosophila melanogaster (Fruit fly) (see paper)
NP_610547 seele from Drosophila melanogaster
Aligns to 26:172 / 189 (77.8%), covers 100.0% of PF11938, 114.5 bits

NP_001292919 protein canopy homolog 3 isoform 3 from Mus musculus
Aligns to 1:81 / 151 (53.6%), covers 46.2% of PF11938, 72.2 bits

NP_598691 cysteine-rich with EGF-like domain protein 1 precursor from Mus musculus
Aligns to 45:103 / 420 (14.0%), covers 39.7% of PF11938, 46.5 bits

XP_015675368 uncharacterized protein LOC107290904 from Protobothrops mucrosquamatus
Aligns to 583:640 / 964 (6.0%), covers 39.1% of PF11938, 45.4 bits

XP_011532410 cysteine-rich with EGF-like domain protein 1 isoform X1 from Homo sapiens
Aligns to 45:102 / 426 (13.6%), covers 39.7% of PF11938, 42.8 bits

CREL1_HUMAN / Q96HD1 Cysteine-rich with EGF-like domain protein 1 from Homo sapiens (Human) (see 4 papers)
Aligns to 45:102 / 420 (13.8%), covers 39.7% of PF11938, 42.7 bits

MZB1_MOUSE / Q9D8I1 Marginal zone B- and B1-cell-specific protein; Plasma cell-induced resident endoplasmic reticulum protein; Plasma cell-induced resident ER protein; pERp1; Proapoptotic caspase adapter protein from Mus musculus (Mouse) (see 4 papers)
Aligns to 48:177 / 188 (69.1%), covers 100.0% of PF11938, 41.2 bits

NP_083996 cysteine-rich with EGF-like domain protein 2 precursor from Mus musculus
Aligns to 28:86 / 350 (16.9%), covers 39.7% of PF11938, 41.1 bits

NP_001019411 marginal zone B- and B1-cell-specific protein precursor from Rattus norvegicus
Aligns to 48:177 / 188 (69.1%), covers 100.0% of PF11938, 40.3 bits

CREL2_RAT / Q4G063 Cysteine-rich with EGF-like domain protein 2 from Rattus norvegicus (Rat) (see paper)
Aligns to 27:86 / 349 (17.2%), covers 40.4% of PF11938, 39.2 bits

MZB1_HUMAN / Q8WU39 Marginal zone B- and B1-cell-specific protein; Mesenteric estrogen-dependent adipose 7; MEDA-7; Plasma cell-induced resident endoplasmic reticulum protein; Plasma cell-induced resident ER protein; pERp1; Proapoptotic caspase adapter protein from Homo sapiens (Human) (see 4 papers)
NP_057543 marginal zone B- and B1-cell-specific protein precursor from Homo sapiens
Aligns to 49:178 / 189 (68.8%), covers 100.0% of PF11938, 33.2 bits

XP_017173467 marginal zone B- and B1-cell-specific protein isoform X1 from Mus musculus
Aligns to 1:119 / 130 (91.5%), covers 71.2% of PF11938, 33.2 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory