PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF12469 (DUF3692)

PF12469.8 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

sll7090 hypothetical protein (NCBI) from Synechocystis sp. PCC 6803
Aligns to 222:344 / 979 (12.6%), covers 99.1% of PF12469, 131.0 bits

CMR2_PYRFU / Q8U1S6 CRISPR system Cmr subunit Cmr2; CRISPR-associated protein Cas10/Cmr2, subtype III-B from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see 7 papers)
PF1129 hypothetical protein (NCBI ptt file) from Pyrococcus furiosus DSM 3638
Aligns to 221:331 / 871 (12.7%), covers 96.4% of PF12469, 105.2 bits

CMR2_SULSO / Q97WX0 CRISPR system CMR subunit Cmr2; CRISPR-associated protein Cas10/Cmr2, subtype III-B from Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (see paper)
SSO1991 Hypothetical protein (NCBI ptt file) from Sulfolobus solfataricus P2
Aligns to 204:354 / 1045 (14.4%), covers 99.1% of PF12469, 98.2 bits

Pcal_0272 CRISPR-associated protein, Crm2 family (NCBI) from Pyrobaculum calidifontis JCM 11548
Aligns to 180:322 / 935 (15.3%), covers 99.1% of PF12469, 86.6 bits

Tneu_0563 CRISPR-associated RAMP Crm2 family protein (RefSeq) from Thermoproteus neutrophilus V24Sta
Aligns to 156:287 / 898 (14.7%), covers 96.4% of PF12469, 85.5 bits

SiL_0601 type III-B CRISPR-associated protein Cas10/Cmr2 from Sulfolobus islandicus LAL14/1
Aligns to 204:327 / 825 (15.0%), covers 99.1% of PF12469, 78.2 bits

Pars_1118 CRISPR-associated protein, Crm2 family (RefSeq) from Pyrobaculum arsenaticum DSM 13514
Aligns to 193:324 / 878 (15.0%), covers 93.7% of PF12469, 74.9 bits

Pcal_1284 CRISPR-associated protein, Crm2 family (NCBI) from Pyrobaculum calidifontis JCM 11548
Aligns to 187:329 / 874 (16.4%), covers 94.6% of PF12469, 73.2 bits

TTHB160 hypothetical protein (NCBI) from Thermus thermophilus HB8
YP_145399 hypothetical protein from Thermus thermophilus HB8
Aligns to 4:109 / 584 (18.2%), covers 97.3% of PF12469, 67.4 bits

PG1987 CRISPR-associated protein, TM1811 family (NCBI) from Porphyromonas gingivalis W83
Aligns to 6:121 / 548 (21.2%), covers 91.9% of PF12469, 39.2 bits

B2RM56 diguanylate cyclase (EC 2.7.7.65) from Porphyromonas gingivalis (see paper)
PGN_1932 hypothetical protein (RefSeq) from Porphyromonas gingivalis ATCC 33277
Aligns to 1:99 / 526 (18.8%), covers 82.9% of PF12469, 25.3 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory