Family Search for PF12883 (DUF3828)

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PF12883 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STY2607 putative lipoprotein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 22:143 / 172 (70.9%), covers 98.4% of PF12883, 164.6 bits

• Selection of Salmonella enterica serovar Typhi genes involved during interaction with human macrophages by screening of a transposon mutant library
  Sabbagh, PloS one 2012
  • “...screening of S . Typhi mutant pool within humanized mice ( STY0016 , STY0039 , STY2607 , ydhO and STY4458 ) [55] and antibodies against some of their products (CdtB, AcrA, PagC, PflB, STY1364, members of the bcf , csg , stb fimbrial operons and of...”

YqhF / b3013 DUF3828 domain-containing protein YqhG from Escherichia coli K-12 substr. MG1655 (see 2 papers)
2 alignments in 24:290 / 308 (60.7%), covering up to 97.6% of PF12883, 157.5 bits

YbjP / b0865 DUF3828 domain-containing lipoprotein YbjP from Escherichia coli K-12 substr. MG1655 (see paper)
b0865 predicted lipoprotein from Escherichia coli str. K-12 substr. MG1655
P75818 Uncharacterized lipoprotein YbjP from Escherichia coli (strain K12)
Aligns to 40:155 / 171 (67.8%), covers 97.6% of PF12883, 114.6 bits

• Reconfiguring the quorum-sensing regulator SdiA of Escherichia coli to control biofilm formation via indole and N-acylhomoserine lactones
  Lee, Applied and environmental microbiology 2009
  • “...group and/or gene b0486 b0545 b0707 b0753 b0773 b0824 b0865 b0897 b1188 b1205 b1256 b1269 b1375 b1376 b1406 b1423 b1440 b1441 b1442 b1443 b1444 b1470 b1487...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b1051 b4107 b0389 b0419 b0581 b0643 b0707 b0753 b0767 b0865 b1003 b1050 b1188 b1164 b1258 b1259 b1341 b1547 b1614 b1783 b1784 b1847 b1999 b2080 b2086 b2602...”
• Microarray analysis of transposition targets in Escherichia coli: the impact of transcription
  Manna, Proceedings of the National Academy of Sciences of the United States of America 2004
  • “...are marked on abscissa. 9782 www.pnas.orgcgidoi10.1073pnas.0400745101 b3684 b0865 b2349 b0864 b4209 b0207 b3395 b4210 b2827 b2593 b4042 b3410 b3399 b4322 b2920...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...368.30 187.63 295.74 45.37 yafT ylcB ybjP yfhM slp b0217 b0572 b0865 b2520 b3506 15.35 P 83.3 P 23.3 P 22 A 5.6 A 344.12 2,207.72 1,027.23 490.08 228.51 13.7 M...”
• SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences
  Lacour, Journal of bacteriology 2004
  • “...(inner membrane) protein (b0707) Putative enzyme (b0865) Hypothetical protein, biofilm dependent (b1481) Hypothetical protein (b1724) Hypothetical protein...”
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b0662 b0707 b0753 b0786 b0789 b0790 b0800 b0806 b0836 b0865 b0897 b0964 b0966 b1003 b1045 b1050 b1060 b1103 b1104 b1105 b1107 b1108 b1111 b1112 b1128 b1145...”
• Biodistribution of ⁸⁹Zr-DFO-labeled avian pathogenic Escherichia coli outer membrane vesicles by PET imaging in chickens
  Li, Poultry science 2023
  • “...294 P0AB26 YCEB Function unknown Cell membrane 295 P64451 YDCL Function unknown Cell membrane 296 P75818 YBJP Function unknown Cell membrane 297 P0AA91 YEAY Function unknown Cell membrane 298 P64564 YGGT Function unknown Cell membrane 299 P77717 YBAY Function unknown Cell membrane 300 P18775 DMSA Energy...”
• Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content
  Reimer, Frontiers in microbiology 2021
  • “...INF Increased in tolA P0ADA5 yajG Uncharacterized lipoprotein YajG BOTH <0.00010 1.2 Increased in tolA P75818 ybjP Uncharacterized lipoprotein YbjP BOTH 0.017 9.5 Increased in tolA P76177 ydgH Protein YdgH tolA <0.00010 INF Increased in tolA P0ADM4 yidQ Uncharacterized protein YidQ tolA 0.0091 INF Increased in...”
• The Escherichia coli proteome: past, present, and future prospects
  Han, Microbiology and molecular biology reviews : MMBR 2006
  • “...receptor 5.43/78,341.86 YbiS YbjP YcbL YcbY P0AAX8 P75818 P75849 P75864 5.6/30,863.3 5.48/16,984.75 4.95/23,784.05 8.96/78,854.1 YccU YcdO YceB YceD YceI P75874...”

Z1095 putative enzyme from Escherichia coli O157:H7 EDL933
Aligns to 42:157 / 173 (67.1%), covers 97.6% of PF12883, 104.1 bits

• Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
  Pieper, PloS one 2011
  • “...(IM or OM) PP 7205 505 LAAC 20 D seq, 18 2* putative lipoprotein YbjP Z1095 ybjP 19150 L (IM or OM) unkn 7180 37 LSAC 21 T 2 putative lipoprotein YgdI Z4126 (ygdI) 8342 L (IM or OM) unkn 5912 1112 LSAC 21 S 3...”

STM0892 putative lipoprotein from Salmonella typhimurium LT2
Aligns to 40:155 / 171 (67.8%), covers 97.6% of PF12883, 89.7 bits

• Population structure, case clusters, and genetic lesions associated with Canadian Salmonella 4,[5],12:i:- isolates
  Clark, PloS one 2021
  • “...from STM0893 to STM0929 (Cluster II in Soyer et al., 2009 [ 7 ]), leaving STM0892 adjacent to STM0930 (see closed genome PNCS015054, GenBank accession no. CP037877). Fels-1 is absent in U.S. clone isolates from our study. While not part of the U.S. clone, isolates with...”

KP1_1863 putative lipoprotein from Klebsiella pneumoniae NTUH-K2044
Aligns to 40:155 / 171 (67.8%), covers 97.6% of PF12883, 79.4 bits

• Reduced virulence in tigecycline-resistant Klebsiella pneumoniae caused by overexpression of ompR and down-regulation of ompK35
  Park, Journal of biomedical science 2023
  • “...17.950 2404.509 KP1_1492 RamA family antibiotic efflux transcriptional regulator 208.283 15.669 2308.962 51.519 17.314 1100.084 KP1_1863 Lipoprotein 61.709 188.337 8823.929 37.549 92.524 3182.386 KP1_2457 META domain-containing protein 36.716 157.346 3514.462 43.764 45.486 2194.189 KP1_2916 Alcohol dehydrogenase AdhP 76.506 88.219 3955.111 18.991 126.001 2476.295 KP1_3005 EamA/RhaT family...”

c3747 Hypothetical protein yqhG precursor from Escherichia coli CFT073
2 alignments in 1:199 / 217 (53.5%), covering up to 40.8% of PF12883, 78.4 bits

• yqhG Contributes to Oxidative Stress Resistance and Virulence of Uropathogenic Escherichia coli and Identification of Other Genes Altering Expression of Type 1 Fimbriae
  Bessaiah, Frontiers in cellular and infection microbiology 2019
  • “...N-6-adenine-methyltransferase of bacteriophage ynjA c2154 ynjA Hypothetical protein yegQ c2611 yegQ Putative protease yegQ yqhG c3747 yqhG Hypothetical protein YqhG precursor Adjacent to yqhG c3746-c3747 yqhG Hypothetical protein YqhG precursor * List includes insertions identified that had at least 4-fold greater or 4-fold less relative light...”

YPO1354 putative lipoprotein from Yersinia pestis CO92
Aligns to 41:176 / 191 (71.2%), covers 97.6% of PF12883, 51.7 bits

• Inhibition of Yersinia pestis DNA adenine methyltransferase in vitro by a stibonic acid compound: identification of a potential novel class of antimicrobial agents
  McKelvie, British journal of pharmacology 2013
  • “...Conserved hypothetical protein 3.89E-02 1.11E-03 1.97 YPO1354 Putative lipoprotein 4.29E-02 1.30E-03 1.96 YPO2935 Putative exported protein 2.93E-03 1.28E-05...”

C6BHF3 Putative periplasmic protein from Ralstonia pickettii (strain 12D)
Aligns to 31:149 / 151 (78.8%), covers 96.8% of PF12883, 36.2 bits

• Crystallization and preliminary X-ray study of TsiV3 from Vibrio cholerae.
  Zhang, Acta crystallographica. Section F, Structural biology communications 2014

Mfla_1724 hypothetical protein from Methylobacillus flagellatus KT
Aligns to 100:160 / 181 (33.7%), covers 33.6% of PF12883, 26.9 bits

• Lanpepsy is a novel lanthanide-binding protein involved in the lanthanide response of the obligate methylotroph Methylobacillus flagellatus
  Hemmann, The Journal of biological chemistry 2023
  • “...a decreased abundance upon addition of La 3+ also included three proteins of unknown function: Mfla_1724, Mfla_1185, and Mfla_0898. Mfla_1724 showed the strongest decrease (15-fold) and is a small protein (21kDa) harboring a domain of unknown function (DUF3828) and a Sec/SPI signal peptide. Mfla_1185 belongs to...”

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