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Family Search for PF13225 (D27-like_C)

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Running HMMer for PF13225

PF13225 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q9SGU7 At1g64680 from Arabidopsis thaliana
NP_564838 beta-carotene isomerase D27 from Arabidopsis thaliana
AT1G64680 hypothetical protein from Arabidopsis thaliana
Aligns to 140:222 / 250 (33.2%), covers 100.0% of PF13225, 131.7 bits

D27_MEDTR / R4HZ96 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27; EC 5.2.1.14 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see 2 papers)
R4HZ96 beta-carotene isomerase (EC 5.2.1.14) from Medicago truncatula (see paper)
Aligns to 146:228 / 252 (32.9%), covers 97.7% of PF13225, 120.2 bits

D27_ARATH / Q7XA78 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27 homolog; AtD27; EC 5.2.1.14 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT1G03055 hypothetical protein from Arabidopsis thaliana
NP_563673 beta-carotene isomerase D27-like protein from Arabidopsis thaliana
Aligns to 160:242 / 264 (31.4%), covers 98.9% of PF13225, 120.0 bits

AT4G01995, NP_680560 hypothetical protein from Arabidopsis thaliana
Aligns to 149:232 / 258 (32.6%), covers 96.6% of PF13225, 119.3 bits

DWARF27 / C7AU21 β-carotene isomerase (EC 5.2.1.14) from Oryza sativa subsp. japonica (see 2 papers)
D27_ORYSJ / C7AU21 Beta-carotene isomerase D27, chloroplastic; Protein DWARF-27; EC 5.2.1.14 from Oryza sativa subsp. japonica (Rice) (see 4 papers)
C7AU21 beta-carotene isomerase (EC 5.2.1.14) from Oryza sativa (see paper)
Aligns to 173:254 / 278 (29.5%), covers 96.6% of PF13225, 115.0 bits

GRMZM2G116461 uncharacterized protein LOC100277925 precursor from Zea mays
Aligns to 157:238 / 262 (31.3%), covers 96.6% of PF13225, 113.8 bits

Or search for genetic data about PF13225 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory