PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13664 (DUF4149)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

PF13664 hits 23 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

F4IYB7 Late embryogenesis abundant protein (LEA) family protein from Arabidopsis thaliana
Aligns to 47:149 / 213 (48.4%), covers 100.0% of PF13664, 104.5 bits

F2DTQ3 Predicted protein from Hordeum vulgare subsp. vulgare
Aligns to 46:148 / 212 (48.6%), covers 100.0% of PF13664, 102.7 bits

TM205_HUMAN / Q6UW68 Transmembrane protein 205 from Homo sapiens (Human) (see paper)
TC 9.A.55.1.1 / Q6UW68 The probable cisplatin exporter, TMEM205. Genetic polymorphisms may alter chemotheraputic responses in lung cancer patients. from Homo sapiens (see 4 papers)
Aligns to 17:118 / 189 (54.0%), covers 95.1% of PF13664, 96.2 bits

Q91XE8 Transmembrane protein 205 from Mus musculus
Aligns to 17:119 / 189 (54.5%), covers 97.1% of PF13664, 95.0 bits

YP098_YEAST / Q06089 Uncharacterized mitochondrial outer membrane protein YPR098C from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
YPR098C Protein of unknown function, localized to the mitochondrial outer membrane from Saccharomyces cerevisiae
Aligns to 11:105 / 161 (59.0%), covers 99.0% of PF13664, 91.8 bits

AFUA_2G02630 conserved hypothetical protein from Aspergillus fumigatus Af293
Aligns to 60:167 / 223 (48.4%), covers 95.1% of PF13664, 90.4 bits

orf19.4947 putative uncharacterized protein from Candida albicans (see paper)
Aligns to 16:110 / 169 (56.2%), covers 99.0% of PF13664, 87.9 bits

AT1G72100 late embryogenesis abundant domain-containing protein / LEA domain-containing protein from Arabidopsis thaliana
Aligns to 316:419 / 480 (21.7%), covers 97.1% of PF13664, 82.6 bits

LOC102584616 uncharacterized protein LOC102584616 from Solanum tuberosum
Aligns to 206:309 / 402 (25.9%), covers 98.0% of PF13664, 81.5 bits

XAND_ASPFU / A4DA06 Xanthocillin biosynthesis cluster protein D from Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) (Neosartorya fumigata) (see paper)
Aligns to 17:117 / 156 (64.7%), covers 88.2% of PF13664, 78.6 bits

LOC21391660 uncharacterized protein LOC21391660 from Morus notabilis
Aligns to 302:405 / 486 (21.4%), covers 98.0% of PF13664, 78.3 bits

AT1G22600 hypothetical protein from Arabidopsis thaliana
Aligns to 199:302 / 385 (27.0%), covers 95.1% of PF13664, 72.9 bits

NGO0618 hypothetical protein from Neisseria gonorrhoeae FA 1090
Aligns to 11:105 / 146 (65.1%), covers 95.1% of PF13664, 63.9 bits

Q9JZ54 DUF4149 domain-containing protein from Neisseria meningitidis serogroup B (strain MC58)
Aligns to 11:105 / 146 (65.1%), covers 94.1% of PF13664, 62.7 bits

XP_004923868 transmembrane protein 205 from Bombyx mori
Aligns to 120:222 / 285 (36.1%), covers 94.1% of PF13664, 61.8 bits

HELPY_0294 hypothetical protein from Helicobacter pylori B38
Aligns to 11:118 / 157 (68.8%), covers 99.0% of PF13664, 59.5 bits

WS0563 conserved hypothetical protein from Wolinella succinogenes DSM 1740
Aligns to 17:124 / 164 (65.9%), covers 98.0% of PF13664, 58.3 bits

HP0288 hypothetical protein from Helicobacter pylori 26695
Aligns to 11:118 / 157 (68.8%), covers 99.0% of PF13664, 57.6 bits

PVX_100835 hypothetical protein, conserved from Plasmodium vivax
Aligns to 42:161 / 210 (57.1%), covers 98.0% of PF13664, 39.6 bits

PF3D7_1237700 conserved protein, unknown function from Plasmodium falciparum 3D7
Aligns to 42:161 / 210 (57.1%), covers 98.0% of PF13664, 36.5 bits

K7EM09 Transmembrane protein 205 (Fragment) from Homo sapiens
Aligns to 1:57 / 120 (47.5%), covers 50.0% of PF13664, 27.7 bits

NVIE_014310 DUF4149 domain-containing protein from Nitrososphaera viennensis EN76
Aligns to 315:427 / 987 (11.4%), covers 95.1% of PF13664, 24.8 bits

PA14_62890 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 10:107 / 135 (72.6%), covers 89.2% of PF13664, 24.7 bits

Or search for genetic data about PF13664 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory