PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13689 (DUF4154)

PF13689.6 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PFLU5211 hypothetical protein (RefSeq) from Pseudomonas fluorescens SBW25
Aligns to 44:184 / 190 (74.2%), covers 99.3% of PF13689, 113.7 bits

NP_249812 hypothetical protein from Pseudomonas aeruginosa PAO1
PA1121 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 45:185 / 190 (74.2%), covers 97.9% of PF13689, 111.0 bits

y3729 hypothetical protein (NCBI ptt file) from Yersinia pestis KIM
YPO0450 putative membrane protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 61:201 / 207 (68.1%), covers 98.6% of PF13689, 110.5 bits

PA14_49880 hypothetical protein (NCBI) from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 45:185 / 190 (74.2%), covers 97.9% of PF13689, 110.1 bits

YfiR / b2603 DUF4154 domain-containing protein YfiR from Escherichia coli K-12 substr. MG1655 (see 5 papers)
YFIR_ECOLI / P64548 Protein YfiR from Escherichia coli (strain K12) (see paper)
Aligns to 29:167 / 172 (80.8%), covers 96.5% of PF13689, 102.7 bits

SEN2592 hypothetical protein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
SC2673 putative periplasmic protein (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 29:167 / 172 (80.8%), covers 97.9% of PF13689, 99.8 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory