PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13778 (DUF4174)

PF13778.6 hits 20 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q90X49 Coiled-coil domain-containing protein 80 from Danio rerio
B7SDQ7 CL2 from Danio rerio
NP_001007199 coiled-coil domain-containing protein 80 precursor from Danio rerio
3 alignments in 125:830 / 867 (45.9%), covering up to 100.0% of PF13778, 353.9 bits

CCD80_CHICK / Q8AXP2 Coiled-coil domain-containing protein 80; Equarin from Gallus gallus (Chicken) (see paper)
NP_989762 coiled-coil domain-containing protein 80 precursor from Gallus gallus
3 alignments in 141:910 / 958 (41.4%), covering up to 100.0% of PF13778, 349.5 bits

CCD80_HUMAN / Q76M96 Coiled-coil domain-containing protein 80; Down-regulated by oncogenes protein 1; Up-regulated in BRS-3 deficient mouse homolog from Homo sapiens (Human) (see 3 papers)
NP_955806 coiled-coil domain-containing protein 80 precursor from Homo sapiens
3 alignments in 141:902 / 950 (41.8%), covering up to 100.0% of PF13778, 348.5 bits

CCD80_RAT / Q6QD51 Coiled-coil domain-containing protein 80; Down-regulated by oncogenes 1 protein; Steroid-sensitive gene 1 protein; SSG-1 from Rattus norvegicus (Rat) (see 2 papers)
NP_071988 coiled-coil domain-containing protein 80 precursor from Rattus norvegicus
3 alignments in 141:901 / 949 (41.8%), covering up to 100.0% of PF13778, 347.0 bits

CCD80_MOUSE / Q8R2G6 Coiled-coil domain-containing protein 80; Up-regulated in BRS-3 deficient mouse from Mus musculus (Mouse) (see 3 papers)
XP_006522563 coiled-coil domain-containing protein 80 isoform X1 from Mus musculus
3 alignments in 141:901 / 949 (41.8%), covering up to 100.0% of PF13778, 346.3 bits

A5PKA3 CCDC80 protein from Bos taurus
3 alignments in 141:906 / 954 (41.6%), covering up to 100.0% of PF13778, 346.2 bits

NP_001014348 sushi repeat-containing protein SRPX precursor from Danio rerio
Aligns to 318:437 / 448 (26.8%), covers 99.2% of PF13778, 122.4 bits

SRPX2_HUMAN / O60687 Sushi repeat-containing protein SRPX2; Sushi-repeat protein upregulated in leukemia from Homo sapiens (Human) (see 6 papers)
NP_055282 sushi repeat-containing protein SRPX2 precursor from Homo sapiens
Aligns to 334:453 / 465 (25.8%), covers 99.2% of PF13778, 121.5 bits

SRPX2_RAT / B5DF94 Sushi repeat-containing protein SRPX2 from Rattus norvegicus (Rat) (see paper)
Aligns to 335:454 / 466 (25.8%), covers 99.2% of PF13778, 121.1 bits

XP_006528669 sushi repeat-containing protein SRPX2 isoform X1 from Mus musculus
Aligns to 314:433 / 445 (27.0%), covers 99.2% of PF13778, 120.5 bits

SRPX2_MOUSE / Q8R054 Sushi repeat-containing protein SRPX2 from Mus musculus (Mouse) (see 2 papers)
Aligns to 337:456 / 468 (25.6%), covers 99.2% of PF13778, 120.3 bits

F1NX90 Sushi repeat-containing protein SRPX2 from Gallus gallus
Aligns to 317:436 / 448 (26.8%), covers 99.2% of PF13778, 118.0 bits

Q63769 Sushi repeat-containing protein SRPX from Rattus norvegicus
Aligns to 332:451 / 464 (25.9%), covers 99.2% of PF13778, 109.3 bits

Q9R0M3 Sushi-repeat-containing protein SRPX from Mus musculus
NP_058607 sushi-repeat-containing protein SRPX isoform 1 precursor from Mus musculus
Aligns to 332:451 / 464 (25.9%), covers 99.2% of PF13778, 107.0 bits

E7F8X0 Sushi repeat-containing protein SRPX2 from Danio rerio
Aligns to 329:448 / 460 (26.1%), covers 99.2% of PF13778, 106.6 bits

NP_001164221 sushi repeat-containing protein SRPX isoform 2 precursor from Homo sapiens
Aligns to 312:431 / 444 (27.0%), covers 99.2% of PF13778, 105.0 bits

P78539 Sushi repeat-containing protein SRPX from Homo sapiens
Aligns to 332:451 / 464 (25.9%), covers 99.2% of PF13778, 104.8 bits

PSPTO_5640 hypothetical protein (NCBI) from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 26:144 / 177 (67.2%), covers 100.0% of PF13778, 102.5 bits

Q32KV1 Sushi-repeat-containing protein, X-linked from Bos taurus
Aligns to 327:446 / 459 (26.1%), covers 99.2% of PF13778, 96.6 bits

Dshi_0724 Methylmalonyl-CoA epimerase (EC 5.1.99.1) from Dinoroseobacter shibae DFL-12
Aligns to 38:140 / 149 (69.1%), covers 99.2% of PF13778, 73.2 bits

Or search for genetic data about PF13778 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory