PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13778 (DUF4174)

PF13778.6 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NP_001007199 coiled-coil domain-containing protein 80 precursor from Danio rerio
3 alignments in 125:830 / 867 (45.9%), covering up to 100.0% of PF13778, 353.9 bits

CCD80_CHICK / Q8AXP2 Coiled-coil domain-containing protein 80; Equarin from Gallus gallus (Chicken) (see paper)
NP_989762 coiled-coil domain-containing protein 80 precursor from Gallus gallus
3 alignments in 141:910 / 958 (41.4%), covering up to 100.0% of PF13778, 349.5 bits

CCD80_HUMAN / Q76M96 Coiled-coil domain-containing protein 80; Down-regulated by oncogenes protein 1; Up-regulated in BRS-3 deficient mouse homolog from Homo sapiens (Human) (see 3 papers)
NP_955806 coiled-coil domain-containing protein 80 precursor from Homo sapiens
3 alignments in 141:902 / 950 (41.8%), covering up to 100.0% of PF13778, 348.5 bits

CCD80_RAT / Q6QD51 Coiled-coil domain-containing protein 80; Down-regulated by oncogenes 1 protein; Steroid-sensitive gene 1 protein; SSG-1 from Rattus norvegicus (Rat) (see 2 papers)
NP_071988 coiled-coil domain-containing protein 80 precursor from Rattus norvegicus
3 alignments in 141:901 / 949 (41.8%), covering up to 100.0% of PF13778, 347.0 bits

CCD80_MOUSE / Q8R2G6 Coiled-coil domain-containing protein 80; Up-regulated in BRS-3 deficient mouse from Mus musculus (Mouse) (see 3 papers)
XP_006522563 coiled-coil domain-containing protein 80 isoform X1 from Mus musculus
3 alignments in 141:901 / 949 (41.8%), covering up to 100.0% of PF13778, 346.3 bits

SRPX2_HUMAN / O60687 Sushi repeat-containing protein SRPX2; Sushi-repeat protein upregulated in leukemia from Homo sapiens (Human) (see 6 papers)
NP_055282 sushi repeat-containing protein SRPX2 precursor from Homo sapiens
Aligns to 334:453 / 465 (25.8%), covers 99.2% of PF13778, 121.5 bits

SRPX2_RAT / B5DF94 Sushi repeat-containing protein SRPX2 from Rattus norvegicus (Rat) (see paper)
Aligns to 335:454 / 466 (25.8%), covers 99.2% of PF13778, 121.1 bits

SRPX2_MOUSE / Q8R054 Sushi repeat-containing protein SRPX2 from Mus musculus (Mouse) (see 2 papers)
Aligns to 337:456 / 468 (25.6%), covers 99.2% of PF13778, 120.3 bits

NP_058607 sushi-repeat-containing protein SRPX precursor from Mus musculus
Aligns to 332:451 / 464 (25.9%), covers 99.2% of PF13778, 107.0 bits

NP_001164221 sushi repeat-containing protein SRPX isoform 2 precursor from Homo sapiens
Aligns to 312:431 / 444 (27.0%), covers 99.2% of PF13778, 105.0 bits

Dshi_0724 Methylmalonyl-CoA epimerase (EC 5.1.99.1) from Dinoroseobacter shibae DFL-12
Aligns to 38:140 / 149 (69.1%), covers 99.2% of PF13778, 73.2 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory