PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF13778 (DUF4174)

PF13778.6 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

CCD80_CHICK / Q8AXP2 Coiled-coil domain-containing protein 80; Equarin from Gallus gallus (Chicken) (see paper)
3 alignments in 141:910 / 958 (41.4%), covering up to 100.0% of PF13778, 349.5 bits

CCD80_HUMAN / Q76M96 Coiled-coil domain-containing protein 80; Down-regulated by oncogenes protein 1; Up-regulated in BRS-3 deficient mouse homolog from Homo sapiens (Human) (see 3 papers)
3 alignments in 141:902 / 950 (41.8%), covering up to 100.0% of PF13778, 348.5 bits

CCD80_RAT / Q6QD51 Coiled-coil domain-containing protein 80; Down-regulated by oncogenes 1 protein; Steroid-sensitive gene 1 protein; SSG-1 from Rattus norvegicus (Rat) (see 2 papers)
3 alignments in 141:901 / 949 (41.8%), covering up to 100.0% of PF13778, 347.0 bits

CCD80_MOUSE / Q8R2G6 Coiled-coil domain-containing protein 80; Up-regulated in BRS-3 deficient mouse from Mus musculus (Mouse) (see 3 papers)
3 alignments in 141:901 / 949 (41.8%), covering up to 100.0% of PF13778, 346.3 bits

SRPX2_HUMAN / O60687 Sushi repeat-containing protein SRPX2; Sushi-repeat protein upregulated in leukemia from Homo sapiens (Human) (see 6 papers)
Aligns to 334:453 / 465 (25.8%), covers 99.2% of PF13778, 121.5 bits

SRPX2_RAT / B5DF94 Sushi repeat-containing protein SRPX2 from Rattus norvegicus (Rat) (see paper)
Aligns to 335:454 / 466 (25.8%), covers 99.2% of PF13778, 121.1 bits

SRPX2_MOUSE / Q8R054 Sushi repeat-containing protein SRPX2 from Mus musculus (Mouse) (see 2 papers)
Aligns to 337:456 / 468 (25.6%), covers 99.2% of PF13778, 120.3 bits

Dshi_0724 Methylmalonyl-CoA epimerase (EC 5.1.99.1) from Dinoroseobacter shibae DFL-12
Aligns to 38:140 / 149 (69.1%), covers 99.2% of PF13778, 73.2 bits

Or search for genetic data about PF13778 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory