PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF16332 (DUF4962)

PF16332.5 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BT4652 conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Aligns to 31:503 / 872 (54.2%), covers 100.0% of PF16332, 772.5 bits

A9CEJ9 guluronate-specific alginate lyase (EC 4.2.2.11); mannuronate-specific alginate lyase (EC 4.2.2.3) from Agrobacterium tumefaciens (see paper)
AAL43841.1 exotype alginate lyase (Atu3025) (EC 4.2.2.-) (see protein)
NP_357573 oligo alginate lyase from Agrobacterium fabrum str. C58
Atu3025 oligo alginate lyase (RefSeq) from Agrobacterium tumefaciens str. C58 (Cereon)
Aligns to 45:465 / 776 (54.3%), covers 83.2% of PF16332, 137.8 bits

Q9KWT4 oligoalginate lyase (EC 4.2.2.26) from Sphingomonas sp. (see 2 papers)
BAB03319.1 oligo alginate lyase (A1-IV;Oal) (EC 4.2.2.-) (see protein)
Aligns to 33:456 / 761 (55.7%), covers 84.7% of PF16332, 119.2 bits

Q5DWP2 mannuronate-specific alginate lyase (EC 4.2.2.3) from Sphingomonas sp. (see paper)
BAD90006.1 alginate lyase (A1-IV') (EC 4.2.2.3) (see protein)
Aligns to 36:405 / 812 (45.6%), covers 72.7% of PF16332, 85.3 bits

C0JBW5 heparin lyase (EC 4.2.2.7) from Bacteroides stercoris (see paper)
ACN29695.1 acharan sulfate lyase 1/2 / heparin lyase II / heparanase II (AlsI;Als2;HepII) (EC 4.2.2.7|4.2.2.8|4.2.2.-) (see protein)
Aligns to 34:267 / 773 (30.3%), covers 33.2% of PF16332, 33.9 bits

DSE_BOVIN / P0C2H4 Dermatan-sulfate epimerase; DS epimerase; EC 5.1.3.19; Chondroitin-glucuronate 5-epimerase from Bos taurus (Bovine) (see paper)
Aligns to 103:357 / 958 (26.6%), covers 34.9% of PF16332, 32.2 bits

DSE_HUMAN / Q9UL01 Dermatan-sulfate epimerase; DS epimerase; EC 5.1.3.19; Chondroitin-glucuronate 5-epimerase; Squamous cell carcinoma antigen recognized by T-cells 2; SART-2 from Homo sapiens (Human) (see 3 papers)
Q9UL01 chondroitin-glucuronate 5-epimerase (EC 5.1.3.19) from Homo sapiens (see 2 papers)
Q9UL01 dermatan-sulfate epimerase (EC 5.1.3.19) from Homo sapiens (see 4 papers)
NP_001309866 dermatan-sulfate epimerase isoform a precursor from Homo sapiens
Aligns to 119:355 / 958 (24.7%), covers 34.7% of PF16332, 31.2 bits

HEPB_PEDHD / C6XZB6 Heparin and heparin-sulfate lyase; Heparin lyase; EC 4.2.2.7; Heparin-sulfate lyase; EC 4.2.2.8; Heparinase II; HepII from Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) (see 3 papers)
C6XZB6 heparinase II (EC 4.2.2.8; EC 4.2.2.7) from Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) (see 3 papers)
ACU04612.1 heparin lyase II / heparinase II (HepB;Phep_2408) (EC 4.2.2.7|4.2.2.8) (see protein)
Aligns to 40:315 / 772 (35.8%), covers 32.4% of PF16332, 30.8 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory