PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF16332 (DUF4962)

PF16332.5 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

A9CEJ9 guluronate-specific alginate lyase (EC 4.2.2.11); mannuronate-specific alginate lyase (EC 4.2.2.3) from Agrobacterium tumefaciens (see paper)
AAL43841.1 exotype alginate lyase (Atu3025) (EC 4.2.2.-) (see protein)
Aligns to 45:465 / 776 (54.3%), covers 83.2% of PF16332, 137.8 bits

Q9KWT4 oligoalginate lyase (EC 4.2.2.26) from Sphingomonas sp. (see 2 papers)
BAB03319.1 oligo alginate lyase (A1-IV;Oal) (EC 4.2.2.-) (see protein)
Aligns to 33:456 / 761 (55.7%), covers 84.7% of PF16332, 119.2 bits

Q5DWP2 mannuronate-specific alginate lyase (EC 4.2.2.3) from Sphingomonas sp. (see paper)
BAD90006.1 alginate lyase (A1-IV') (EC 4.2.2.3) (see protein)
Aligns to 36:405 / 812 (45.6%), covers 72.7% of PF16332, 85.3 bits

C0JBW5 heparin lyase (EC 4.2.2.7) from Bacteroides stercoris (see paper)
ACN29695.1 acharan sulfate lyase 1/2 / heparin lyase II / heparanase II (AlsI;Als2;HepII) (EC 4.2.2.7|4.2.2.8|4.2.2.-) (see protein)
Aligns to 34:267 / 773 (30.3%), covers 33.2% of PF16332, 33.9 bits

DSE_BOVIN / P0C2H4 Dermatan-sulfate epimerase; DS epimerase; Chondroitin-glucuronate 5-epimerase; EC 5.1.3.19 from Bos taurus (Bovine) (see paper)
Aligns to 103:357 / 958 (26.6%), covers 34.9% of PF16332, 32.2 bits

DSE_HUMAN / Q9UL01 Dermatan-sulfate epimerase; DS epimerase; Chondroitin-glucuronate 5-epimerase; Squamous cell carcinoma antigen recognized by T-cells 2; SART-2; EC 5.1.3.19 from Homo sapiens (Human) (see 3 papers)
Q9UL01 chondroitin-glucuronate 5-epimerase (EC 5.1.3.19) from Homo sapiens (see 2 papers)
Q9UL01 dermatan-sulfate epimerase (EC 5.1.3.19) from Homo sapiens (see 4 papers)
Aligns to 119:355 / 958 (24.7%), covers 34.7% of PF16332, 31.2 bits

HEPB_PEDHD / C6XZB6 Heparin and heparin-sulfate lyase; Heparin lyase; Heparin-sulfate lyase; Heparinase II; HepII; EC 4.2.2.7; EC 4.2.2.8 from Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) (see 3 papers)
C6XZB6 heparinase II (EC 4.2.2.8; EC 4.2.2.7) from Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) (see 3 papers)
ACU04612.1 heparin lyase II / heparinase II (HepB;Phep_2408) (EC 4.2.2.7|4.2.2.8) (see protein)
Aligns to 40:315 / 772 (35.8%), covers 32.4% of PF16332, 30.8 bits

Or search for genetic data about PF16332 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory