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Family Search for PF16473 (DUF5051)

PF16473.5 hits 37 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

c1402 Exodeoxyribonuclease VIII (NCBI ptt file) from Escherichia coli CFT073
Aligns to 631:803 / 813 (21.3%), covers 99.4% of PF16473, 186.2 bits

Z2037 putative exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific encoded by prophage CP-933O (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 641:813 / 823 (21.0%), covers 99.4% of PF16473, 182.9 bits

EC1303_c12230 exonuclease from Escherichia coli 1303
Aligns to 641:813 / 823 (21.0%), covers 99.4% of PF16473, 182.7 bits

EC1303_c16970 exonuclease from Escherichia coli 1303
Aligns to 641:813 / 823 (21.0%), covers 99.4% of PF16473, 180.4 bits

ECs1503 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 2:135 / 145 (92.4%), covers 73.5% of PF16473, 131.2 bits

EXOD_BPT4 / P04536 Exodeoxyribonuclease; EC 3.1.11.1; 3'-5' exonuclease from Enterobacteria phage T4 (Bacteriophage T4) (see 2 papers)
Aligns to 2:202 / 227 (88.5%), covers 76.5% of PF16473, 71.2 bits

B2HGU6 poly(A)-specific ribonuclease (EC 3.1.13.4) from Mycobacterium marinum (see paper)
Aligns to 1:157 / 159 (98.7%), covers 98.2% of PF16473, 70.9 bits

NCgl2099 hypothetical protein from Corynebacterium glutamicum ATCC 13032
Aligns to 1:156 / 168 (92.9%), covers 100.0% of PF16473, 70.6 bits

EXRBN_MYCTU / P9WJ73 3'-5' exoribonuclease Rv2179c; EC 3.1.13.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
NP_216695 3'-5' exoribonuclease from Mycobacterium tuberculosis H37Rv
Rv2179c hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 1:157 / 168 (93.5%), covers 98.8% of PF16473, 70.2 bits

SA1710 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
Aligns to 5:163 / 184 (86.4%), covers 95.8% of PF16473, 51.7 bits

lp_0811 DNA-directed DNA polymerase III, epsilon chain (putative) (NCBI ptt file) from Lactobacillus plantarum WCFS1
Aligns to 1:156 / 173 (90.2%), covers 95.2% of PF16473, 50.9 bits

EF2736 exonuclease (NCBI ptt file) from Enterococcus faecalis V583
Aligns to 2:161 / 177 (90.4%), covers 97.0% of PF16473, 50.8 bits

LBUL_0800 3'-5' exonuclease with to CRISPR-associated protein from COG1343 (NCBI) from Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Aligns to 125:283 / 290 (54.8%), covers 96.4% of PF16473, 48.4 bits

LCRIS_01207 CRISPR-associated protein, Cas2 (RefSeq) from Lactobacillus crispatus ST1
Aligns to 129:290 / 298 (54.4%), covers 95.8% of PF16473, 46.1 bits

GAVG_0516 type I-E CRISPR-associated endoribonuclease Cas2 from Gardnerella vaginalis ATCC 14018 = JCM 11026
Aligns to 177:352 / 359 (49.0%), covers 98.2% of PF16473, 41.7 bits

CJE0502 exonuclease, DNA polymerase III, epsilon subunit family (NCBI) from Campylobacter jejuni RM1221
Aligns to 48:205 / 233 (67.8%), covers 97.6% of PF16473, 41.1 bits

TP0643 DNA polymerase III, subunit epsilon (dnaQ) (NCBI ptt file) from Treponema pallidum subsp. pallidum str. Nichols
Aligns to 14:177 / 215 (76.3%), covers 97.0% of PF16473, 40.9 bits

FP1195 Probable DNA polymerase III, epsilon subunit (RefSeq) from Flavobacterium psychrophilum JIP02/86
Aligns to 2:159 / 160 (98.8%), covers 95.8% of PF16473, 39.0 bits

CJJ81176_0477 DNA polymerase III subunit epsilon (NCBI) from Campylobacter jejuni subsp. jejuni 81-176
Aligns to 71:228 / 253 (62.5%), covers 97.6% of PF16473, 38.8 bits

blr0640 DNA polymerase III epsilon chain (NCBI ptt file) from Bradyrhizobium japonicum USDA 110
Aligns to 2:166 / 239 (69.0%), covers 95.8% of PF16473, 35.7 bits

HP1387 DNA polymerase III epsilon subunit (dnaQ) (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 108:267 / 350 (45.7%), covers 97.6% of PF16473, 35.7 bits

LSEI_0356 3'-5' exonuclease and CRISPR-associated protein cas2 (NCBI) from Lactobacillus casei ATCC 334
Aligns to 129:291 / 301 (54.2%), covers 95.2% of PF16473, 35.1 bits

Krad_3247 DEDD exnuclease domain-containing protein from Kineococcus radiotolerans SRS30216 = ATCC BAA-149
Aligns to 27:193 / 601 (27.8%), covers 98.8% of PF16473, 34.5 bits

DR0856, DR_0856 DNA polymerase III, epsilon subunit, putative (NCBI ptt file) from Deinococcus radiodurans R1
Aligns to 22:191 / 197 (86.3%), covers 77.7% of PF16473, 32.3 bits

ZMO0039 DNA polymerase III, epsilon subunit (RefSeq) from Zymomonas mobilis subsp. mobilis ZM4
Aligns to 2:167 / 234 (70.9%), covers 96.4% of PF16473, 31.8 bits

VC1006 ribonuclease T (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 38:218 / 243 (74.5%), covers 98.2% of PF16473, 31.5 bits

BPSL2556 possible DNA polymerase/helicase (NCBI) from Burkholderia pseudomallei K96243
Aligns to 15:173 / 381 (41.7%), covers 97.0% of PF16473, 31.4 bits

ACICU_01102 DNA polymerase III, epsilon subunit (RefSeq) from Acinetobacter baumannii ACICU
Aligns to 23:205 / 220 (83.2%), covers 98.2% of PF16473, 31.1 bits

TTE1398 DNA polymerase III alpha subunit, the Gram-positive type (NCBI ptt file) from Thermoanaerobacter tengcongensis MB4
Aligns to 387:547 / 1401 (11.5%), covers 96.4% of PF16473, 30.4 bits

PA1816 DNA polymerase III subunit epsilon (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 2:171 / 246 (69.1%), covers 96.4% of PF16473, 30.4 bits

PA14_41050 DNA polymerase III, epsilon chain (NCBI) from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 2:171 / 246 (69.1%), covers 96.4% of PF16473, 30.3 bits

PA3232 DNA polymerase III subunit epsilon (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 31:199 / 208 (81.2%), covers 94.6% of PF16473, 30.3 bits

VC2233 DNA polymerase III, epsilon subunit (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 11:184 / 247 (70.4%), covers 95.2% of PF16473, 30.2 bits

PP_0353 exonuclease (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 40:205 / 236 (70.3%), covers 96.4% of PF16473, 29.9 bits

YP_003572414 DNA helicase II (RefSeq) from Salinibacter ruber
Aligns to 826:994 / 1227 (13.8%), covers 97.6% of PF16473, 28.8 bits

Rv2191 hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 42:211 / 645 (26.4%), covers 97.6% of PF16473, 28.3 bits

PP1085 ribonuclease T (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 10:189 / 203 (88.7%), covers 97.0% of PF16473, 27.7 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory