Clusters of Characterized Proteins

Clustering the characterized proteins for dctM (2-oxoglutarate TRAP transporter, large permease component DctM) in 2-oxoglutarate (alpha-ketoglutarate) catabolism

Or see other characterized proteins similar to dctM

Or see all steps for 2-oxoglutarate (alpha-ketoglutarate) catabolism

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Definition of dctM

• Curated sequence 6938090: alpha-ketoglutarate TRAP transporter, large permease component
• Curated sequence 5208943: dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component
• UniProt sequence I7DRS6: SubName: Full=TRAP transporter, subunit DctM {ECO:0000313|EMBL:AFO91751.1};
• Ignore hits to O07838 when looking for 'other' hits (C4-dicarboxylate TRAP transporter large permease protein DctM. DctM, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate))
• Ignore hits to Q9HU16 when looking for 'other' hits (C4-dicarboxylate TRAP transporter large permease protein DctM)
• Comment: O07838 and Q9HU16 are reported to transport various dicarboxylates, and transport of 2-oxoglutarate does not seem to have been tested, so they are marked ignore.

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 465-467 amino acids (2/3 heteromeric)

I7DRS6 TRAP transporter, subunit DctM
467 amino acids: PaperBLAST, CDD, Compare to cluster

Shew_1444 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component from Shewanella loihica PV-4
PFams: DctM
Heteromeric, 465 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_2211 alpha-ketoglutarate TRAP transporter, large permease component from Shewanella amazonensis SB2B
PFams: DctM
Heteromeric, 466 amino acids: PaperBLAST, CDD, Compare to cluster