GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ligK (4-oxalocitramalate aldolase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to ligK

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Definition of ligK

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 227-238 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

HMGA_PSEP1 / A5W059 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)
A5W059 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida
PFams: RraA-like
238 amino acids: PaperBLAST, CDD, Compare to cluster

LIGK_SPHSK / G2IQQ8 4-carboxy-4-hydroxy-2-oxoadipate aldolase; CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Sphingobium sp. (strain NBRC 103272 / SYK-6)
PFams: RraA-like
228 amino acids: PaperBLAST, CDD, Compare to cluster

Q88JX9 subunit of 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
GALC_PSEPK / Q88JX9 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase; CHA aldolase; Gallate degradation protein C; EC 4.1.3.17 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: RraA-like
238 amino acids: PaperBLAST, CDD, Compare to cluster

Q9AQI0 4-oxalocitramalate aldolase subunit (EC 4.1.1.112; EC 4.1.3.17) from Pseudomonas straminea
HMGA_PSEOC / Q9AQI0 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; 4-hydroxy-2-oxoglutarate aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.16; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas straminea
PFams: RraA-like
227 amino acids: PaperBLAST, CDD, Compare to cluster

Q93PS8 HMG aldolase monomer (EC 4.1.3.17) from Comamonas testosteroni
PFams: RraA-like
227 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

RRAAH_YEAST / P40011 4-hydroxy-4-methyl-2-oxoglutarate aldolase; HMG aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; Regulator of ribonuclease activity homolog; RraA-like protein; EC 4.1.3.17; EC 4.1.1.112 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: RraA-like
234 amino acids: PaperBLAST, CDD

RRAAH_THET8 / Q5SIP7 4-hydroxy-4-methyl-2-oxoglutarate aldolase; HMG aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; Regulator of ribonuclease activity homolog; EC 4.1.3.17; EC 4.1.1.112 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: RraA-like
164 amino acids: PaperBLAST, CDD