Clusters of Characterized Proteins

Clustering the characterized proteins for pcaB (3-carboxymuconate cycloisomerase) in 4-hydroxybenzoate catabolism

Or see other characterized proteins similar to pcaB

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Definition of pcaB

• Curated proteins or TIGRFams with EC 5.5.1.2
• UniProt sequence A0A0C4YE08: SubName: Full=3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:AJG23937.1}; EC=5.5.1.2 {ECO:0000313|EMBL:AJG23937.1};
• Comment: RR42_RS32055 (A0A0C4YE08) is a somewhat diverged pcaB, confirmed by fitness data

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 353-470 amino acids (not heteromeric)

Q2HNY9 3-carboxymuconate lactonizing enzyme type 2 (EC 5.5.1.2) from Hydrogenophaga intermedia
PFams: Lyase_1
453 amino acids: PaperBLAST, CDD, Compare to cluster

Q2HNZ1 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens
PFams: Lyase_1
353 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0C4YE08 3-carboxy-cis,cis-muconate cycloisomerase; EC=5.5.1.2
470 amino acids: PaperBLAST, CDD, Compare to cluster