GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for pta (phosphate acetyltransferase) in 4-hydroxybenzoate catabolism

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Definition of pta

Fetched 18 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 16 of these sequences

Found 2 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 320-338 amino acids (not heteromeric)

O52593 phosphate acetyltransferase (EC 2.3.1.8) from Hungateiclostridium thermocellum
PFams: PTA_PTB
332 amino acids: PaperBLAST, CDD, Compare to cluster

P41790 phosphate acetyltransferase (EC 2.3.1.8) from Salmonella enterica
PFams: PTA_PTB
338 amino acids: PaperBLAST, CDD, Compare to cluster

Q5LMK3 phosphate acetyltransferase (EC 2.3.1.8) from Ruegeria pomeroyi
PFams: PTA_PTB
337 amino acids: PaperBLAST, CDD, Compare to cluster

b2458 phosphate acetyltransferase EutD (EC 2.3.1.8) from Escherichia coli K-12 substr. MG1655
P77218 phosphate acetyltransferase EutD (EC 2.3.1.8) from Escherichia coli (strain K12)
RF|NP_416953 ethanolamine utilization protein eutD from Escherichia coli K12
PFams: PTA_PTB
338 amino acids: PaperBLAST, CDD, Compare to cluster

PTAS_METTE / P38503 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 from Methanosarcina thermophila
PFams: PTA_PTB
333 amino acids: PaperBLAST, CDD, Compare to cluster

PTAS_CORGL / P77844 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
PFams: PTA_PTB
329 amino acids: PaperBLAST, CDD, Compare to cluster

Q9F1X6 phosphotransacetylase (EC 2.3.1.8) from Lactobacillus sanfranciscensis
PFams: PTA_PTB
328 amino acids: PaperBLAST, CDD, Compare to cluster

A3SR26 phosphate acetyltransferase (EC 2.3.1.8) from Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM)
PFams: PTA_PTB
328 amino acids: PaperBLAST, CDD, Compare to cluster

P75359 phosphate acetyltransferase (EC 2.3.1.8) from Mycoplasma pneumoniae (strain ATCC 29342 / M129)
PFams: PTA_PTB
320 amino acids: PaperBLAST, CDD, Compare to cluster

P71103 phosphotransacetylase (EC 2.3.1.8) from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
PFams: PTA_PTB
333 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 691-792 amino acids (not heteromeric)

C1DER7 phosphate acetyltransferase (EC 2.3.1.8) from Azotobacter vinelandii
PFams: AAA_26, DRTGG, PTA_PTB
691 amino acids: PaperBLAST, CDD, Compare to cluster

C1DQG8 phosphate acetyltransferase (EC 2.3.1.8) from Azotobacter vinelandii
PFams: AAA_26, DRTGG, PTA_PTB
712 amino acids: PaperBLAST, CDD, Compare to cluster

b2297 phosphate acetyltransferase (EC 2.3.1.8; EC 2.3.1.222) from Escherichia coli K-12 substr. MG1655
P0A9M8 phosphate acetyltransferase (EC 2.3.1.8; EC 2.3.1.222) from Escherichia coli (strain K12)
PTA_ECOLI / P0A9M8 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 from Escherichia coli (strain K12)
P0A9M8 phosphate acetyltransferase (EC 2.3.1.8) from Escherichia coli
CH_001817 phosphate acetyltransferase from Escherichia coli K12
PFams: AAA_26, DRTGG, PTA_PTB
714 amino acids: PaperBLAST, CDD, Compare to cluster

PTA_SALTY / Q8ZND6 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8ZND6 phosphate acetyltransferase (EC 2.3.1.8) from Salmonella enterica
PFams: AAA_26, DRTGG, PTA_PTB
714 amino acids: PaperBLAST, CDD, Compare to cluster

PTA_PSEAE / Q9I5A5 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: AAA_26, DRTGG, PTA_PTB
704 amino acids: PaperBLAST, CDD, Compare to cluster

A8IZZ9 phosphate acetyltransferase (EC 2.3.1.8) from Chlamydomonas reinhardtii
PFams: AAA_26, DRTGG, PTA_PTB
792 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

CH_090885 phosphate acetyltransferase; EC 2.3.1.8 from Thermotoga maritima
PFams: PTA_PTB
294 amino acids: PaperBLAST, CDD

Q9XDN5 phosphate propanoyltransferase (EC 2.3.1.8; EC 2.3.1.222) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PDUL_SALTY / Q9XDN5 Phosphate propanoyltransferase; Phosphate acyltransferase PduL; Phosphotransacylase PduL; PTAC; Propanediol utilization protein PduL; EC 2.3.1.222 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: PTAC, PTAC
210 amino acids: PaperBLAST, CDD