Clusters of Characterized Proteins

Clustering the characterized proteins for AZOBR_RS08235 (D-alanine ABC transporter, permease component 1) in D-alanine catabolism

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Definition of AZOBR_RS08235

• Curated sequence AZOBR_RS08235: L-proline and D-alanine ABC transporter, permease component 1
• Comment: An ABC transporter from Azospirillum brasilense, with 5 components, was identified in the fitness data. (Just one component was in the reannotations.) MctP was missed by the clustering tool, but is annotated as transporting D-alanine (see PMC135354, Figure 4A, showing that D-alanine inhibits transport). A related protein, BPHYT_RS22245 (B2T7V3), is involved in D-alanine utilization.

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (1/1 heteromeric)

AZOBR_RS08235 L-proline and D-alanine ABC transporter, permease component 1 from Azospirillum brasilense Sp245
PFams: BPD_transp_2
Heteromeric, 301 amino acids: PaperBLAST, CDD