Clusters of Characterized Proteins

Clustering the characterized proteins for larD (D,L-lactic acid transporter) in D-lactate catabolism

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Definition of larD

• Curated sequence F9UST3: D/L-lactic acid transporter; Lactate racemization operon protein LarD; Lactic acid channel. GlpF1; transports water, dihydroxyacetone and glycerol as well as D,L-lactic acid
• Curated sequence F9UMX3: Glycerol uptake facilitator protein 4; D/L-lactic acid transporter; Lactic acid channel

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 238-238 amino acids (not heteromeric)

GLPF4_LACPL / F9UMX3 Glycerol uptake facilitator protein 4; D/L-lactic acid transporter; Lactic acid channel from Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
PFams: MIP
238 amino acids: PaperBLAST, CDD, Compare to cluster

LARD_LACPL / F9UST3 D/L-lactic acid transporter; Lactate racemization operon protein LarD; Lactic acid channel from Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
TC 1.A.8.2.4 / C6VJ63 GlpF1; transports water, dihydroxyacetone and glycerol as well as D,L-lactic acid from Lactobacillus plantarum (strain JDM1)
PFams: MIP
238 amino acids: PaperBLAST, CDD, Compare to cluster