Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for Dshi_1194 (TRAP transporter for succinate, fumarate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components) in L-malate catabolism

Or see other characterized proteins similar to Dshi_1194

Or see all steps for L-malate catabolism

Or cluster curated proteins matching a keyword

Definition of Dshi_1194

UniProt sequence A8LI82: SubName: Full=TRAP transporter {ECO:0000313|EMBL:ABV92936.1};
UniProt sequence E4PQE4: SubName: Full=TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:ADP96487.1};
Comment: The TRAP system Dshi_1194:Dshi_1195 (A8LI82,A8LI83) is important for utilization of succinate, fumarate, L-malate, and 2-oxoglutarate, as is the related system HP15_723:HP15_722 (E4PQE4,E4PQE3).

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 729-743 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A8LI82 TRAP transporter
743 amino acids: PaperBLAST, CDD, Compare to cluster

E4PQE4 TRAP transporter, 4TM/12TM fusion protein
729 amino acids: PaperBLAST, CDD, Compare to cluster