Clusters of Characterized Proteins

Clustering the characterized proteins for braD (L-alanine/L-serine/L-threonine ABC transporter, permease component 1 (BraD/NatD)) in L-alanine catabolism

Or see other characterized proteins similar to braD

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Definition of braD

• Curated sequence P21627: High-affinity branched-chain amino acid transport system permease protein BraD, component of Branched chain amino acid uptake transporter. Transports alanine
• Curated sequence P74318: NatD aka LivH aka SLR0949, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE
• Curated sequence Q8YXD0: NatD, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB)

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 286-307 amino acids (heteromeric)

TC 3.A.1.4.2 / P74318 NatD aka LivH aka SLR0949, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE
PFams: BPD_transp_2
Heteromeric, 286 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.4.8 / P21627 High-affinity branched-chain amino acid transport system permease protein BraD, component of Branched chain amino acid uptake transporter. Transports alanine from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: BPD_transp_2
Heteromeric, 307 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.4.6 / Q8YXD0 NatD, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB)
PFams: BPD_transp_2
Heteromeric, 288 amino acids: PaperBLAST, CDD, Compare to cluster