Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for araA (L-arabinose isomerase) in L-arabinose catabolism

Or see other characterized proteins similar to araA

Or see all steps for L-arabinose catabolism

Or cluster curated proteins matching a keyword

Definition of araA

Curated proteins or TIGRFams with EC 5.3.1.4

Fetched 36 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 34 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 473-509 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A191W0D9 L-arabinose isomerase (EC 5.3.1.4) from Bacillus coagulans
PFams: Arabinose_Isome, Arabinose_Iso_C
473 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1L2F0V9 L-arabinose isomerase (EC 5.3.1.4) from Enterococcus faecium
PFams: Arabinose_Isome, Arabinose_Iso_C
474 amino acids: PaperBLAST, CDD, Compare to cluster

A0LT86 L-arabinose isomerase (EC 5.3.1.4) from Acidothermus cellulolyticus
PFams: Arabinose_Isome, Arabinose_Iso_C
501 amino acids: PaperBLAST, CDD, Compare to cluster

C0C0X3 L-arabinose isomerase (EC 5.3.1.4) from Clostridium hylemonae
PFams: Arabinose_Isome, Arabinose_Iso_C
501 amino acids: PaperBLAST, CDD, Compare to cluster

D9ILD9 L-arabinose isomerase (EC 5.3.1.4) from Lactobacillus fermentum
PFams: Arabinose_Isome, Arabinose_Iso_C
474 amino acids: PaperBLAST, CDD, Compare to cluster

F6KRI7 L-arabinose isomerase (EC 5.3.1.4) from Anoxybacillus flavithermus
PFams: Arabinose_Isome, Arabinose_Iso_C
496 amino acids: PaperBLAST, CDD, Compare to cluster

G1JRK8 L-arabinose isomerase (EC 5.3.1.4) from Pediococcus pentosaceus
PFams: Arabinose_Isome, Arabinose_Iso_C
474 amino acids: PaperBLAST, CDD, Compare to cluster

H6UGW9 L-arabinose isomerase (EC 5.3.1.4) from Arthrobacter sp.
PFams: Arabinose_Isome, Arabinose_Iso_C
503 amino acids: PaperBLAST, CDD, Compare to cluster

I3ZR32 L-arabinose isomerase (EC 5.3.1.4) from Bifidobacterium longum
Q8G7J3 L-arabinose isomerase (EC 5.3.1.4) from Bifidobacterium longum
PFams: Arabinose_Isome, Arabinose_Iso_C
505 amino acids: PaperBLAST, CDD, Compare to cluster

J9E728 L-arabinose isomerase (EC 5.3.1.4) from Alicyclobacillus hesperidum
PFams: Arabinose_Isome, Arabinose_Iso_C
498 amino acids: PaperBLAST, CDD, Compare to cluster

P06189 L-arabinose isomerase (EC 5.3.1.4) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

b0062 L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli K-12 substr. MG1655
P08202 L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli (strain K12)
ARAA_ECOLI / P08202 L-arabinose isomerase; EC 5.3.1.4 from Escherichia coli (strain K12)
P08202 L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

P58538 L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

P58539 L-arabinose isomerase (EC 5.3.1.4) from Salmonella enterica subsp. enterica serovar Typhi
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

P58540 L-arabinose isomerase (EC 5.3.1.4) from Yersinia pestis
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

Q2VMT2 L-arabinose isomerase (EC 5.3.1.4) from Alicyclobacillus acidocaldarius
PFams: Arabinose_Isome, Arabinose_Iso_C
497 amino acids: PaperBLAST, CDD, Compare to cluster

Q5KYP7 L-arabinose isomerase (EC 5.3.1.4) from Geobacillus kaustophilus
PFams: Arabinose_Isome, Arabinose_Iso_C
496 amino acids: PaperBLAST, CDD, Compare to cluster

Q65J10 L-arabinose isomerase (EC 5.3.1.4) from Bacillus licheniformis
PFams: Arabinose_Isome, Arabinose_Iso_C
474 amino acids: PaperBLAST, CDD, Compare to cluster

Q6VAK6 L-arabinose isomerase (EC 5.3.1.4) from Parageobacillus thermoglucosidasius
PFams: Arabinose_Isome, Arabinose_Iso_C
496 amino acids: PaperBLAST, CDD, Compare to cluster

Q6W9D4 L-arabinose isomerase (EC 5.3.1.4) from Geobacillus thermodenitrificans
PFams: Arabinose_Isome, Arabinose_Iso_C
497 amino acids: PaperBLAST, CDD, Compare to cluster

Q7UDT4 L-arabinose isomerase (EC 5.3.1.4) from Shigella flexneri
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

Q88S84 L-arabinose isomerase (EC 5.3.1.4) from Lactobacillus plantarum
PFams: Arabinose_Isome, Arabinose_Iso_C
474 amino acids: PaperBLAST, CDD, Compare to cluster

Q8AAW1 L-arabinose isomerase (EC 5.3.1.4) from Bacteroides thetaiotaomicron
PFams: Arabinose_Isome, Arabinose_Iso_C
509 amino acids: PaperBLAST, CDD, Compare to cluster

Q8EMP4 L-arabinose isomerase (EC 5.3.1.4) from Oceanobacillus iheyensis
PFams: Arabinose_Isome, Arabinose_Iso_C
474 amino acids: PaperBLAST, CDD, Compare to cluster

Q8FL89 L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

Q97JE0 L-arabinose isomerase (EC 5.3.1.4) from Clostridium acetobutylicum
PFams: Arabinose_Isome, Arabinose_Iso_C
488 amino acids: PaperBLAST, CDD, Compare to cluster

Q97JE4 L-arabinose isomerase (EC 5.3.1.4) from Clostridium acetobutylicum
PFams: Arabinose_Isome, Arabinose_Iso_C
488 amino acids: PaperBLAST, CDD, Compare to cluster

Q9KBQ2 L-arabinose isomerase (EC 5.3.1.4) from Bacillus halodurans
PFams: Arabinose_Isome, Arabinose_Iso_C
497 amino acids: PaperBLAST, CDD, Compare to cluster

Q9WYB3 L-arabinose isomerase (EC 5.3.1.4) from Thermotoga maritima
PFams: Arabinose_Isome, Arabinose_Iso_C
496 amino acids: PaperBLAST, CDD, Compare to cluster

ARAA_BACSU / P94523 L-arabinose isomerase; EC 5.3.1.4 from Bacillus subtilis (strain 168)
P94523 L-arabinose isomerase (EC 5.3.1.4) from Bacillus subtilis
PFams: Arabinose_Isome, Arabinose_Iso_C
496 amino acids: PaperBLAST, CDD, Compare to cluster

ARAA_GEOSE / Q9S467 L-arabinose isomerase; EC 5.3.1.4 from Geobacillus stearothermophilus (Bacillus stearothermophilus)
Q9S467 L-arabinose isomerase (EC 5.3.1.4) from Geobacillus stearothermophilus
PFams: Arabinose_Isome, Arabinose_Iso_C
496 amino acids: PaperBLAST, CDD, Compare to cluster

Shewana3_2066 L-arabinose isomerase (EC 5.3.1.4) from Shewanella sp. ANA-3
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

Echvi_1879 L-arabinose isomerase (EC 5.3.1.4) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: Arabinose_Isome, Arabinose_Iso_C
500 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS08615 L-arabinose isomerase (EC 5.3.1.4) from Pedobacter sp. GW460-11-11-14-LB5
PFams: Arabinose_Isome, Arabinose_Iso_C
496 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

Q70G56 L-arabinose isomerase (EC 5.3.1.4) from Thermoanaerobacter mathranii
PFams: Arabinose_Isome, Arabinose_Iso_C
465 amino acids: PaperBLAST, CDD

Q93UQ5 L-arabinose isomerase (EC 5.3.1.4) from Acinetobacter sp.
249 amino acids: PaperBLAST, CDD