Clusters of Characterized Proteins

Clustering the characterized proteins for araB (ribulokinase) in L-arabinose catabolism

Or see other characterized proteins similar to araB

Or see all steps for L-arabinose catabolism

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Definition of araB

• Curated proteins or TIGRFams with EC 2.7.1.16
• UniProt sequence C4B4W2: SubName: Full=L-ribulokinase {ECO:0000313|EMBL:BAH60840.1};
• UniProt sequence Q8AAW2: SubName: Full=Xylulose kinase (Xylulokinase) {ECO:0000313|EMBL:AAO75457.1};
• Comment: BT0350 (Q8AAW2) is similar to the L-ribulokinase of Corynebacterium glutamicum (PMC2687266; C4B4W2) and is specifically improtant during growth on L-arabinose.

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 560-566 amino acids (not heteromeric)

Q9KBQ3 ribulokinase (EC 2.7.1.16) from Bacillus halodurans
PFams: FGGY_N, FGGY_C
563 amino acids: PaperBLAST, CDD, Compare to cluster

b0063 ribulokinase (EC 2.7.1.16) from Escherichia coli K-12 substr. MG1655
P08204 ribulokinase (EC 2.7.1.16) from Escherichia coli (strain K12)
ARAB_ECOLI / P08204 Ribulokinase; EC 2.7.1.16 from Escherichia coli (strain K12)
CH_002149 ribulokinase; EC 2.7.1.16 from Escherichia coli
PFams: FGGY_C
566 amino acids: PaperBLAST, CDD, Compare to cluster

ARAB_BACSU / P94524 Ribulokinase; EC 2.7.1.16 from Bacillus subtilis (strain 168)
PFams: FGGY_N, FGGY_C
560 amino acids: PaperBLAST, CDD, Compare to cluster

Echvi_0515 Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: FGGY_N, FGGY_C
562 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS08625 Ribulokinase (EC 2.7.1.16) from Pedobacter sp. GW460-11-11-14-LB5
PFams: FGGY_N, FGGY_C
566 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 531-576 amino acids (not heteromeric)

C4B4W2 L-ribulokinase
576 amino acids: PaperBLAST, CDD, Compare to cluster

Q8AAW2 Xylulose kinase (Xylulokinase)
531 amino acids: PaperBLAST, CDD, Compare to cluster