Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for xacC (L-arabinono-1,4-lactonase) in L-arabinose catabolism

Or see other characterized proteins similar to xacC

Or see all steps for L-arabinose catabolism

Or cluster curated proteins matching a keyword

Definition of xacC

Curated proteins or TIGRFams with EC 3.1.1.15
UniProt sequence Q92RN9: RecName: Full=Putative sugar lactone lactonase; EC=3.1.1.-;
UniProt sequence A0A165IRV8: SubName: Full=Gluconolactonase {ECO:0000313|EMBL:KZT13455.1};
Ignore hits to Q92RN9 when looking for 'other' hits (Putative sugar lactone lactonase; EC 3.1.1.-)
Comment: SMc00883 (Q92RN9) is specifically important for L-arabinose utilization and does not appear polar. (It has a vague annotation in SwissProt.) Similarly for Ac3H11_615 (A0A165IRV8)

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 287-316 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

ARALA_AZOBR / Q1JUP5 L-arabinolactonase; EC 3.1.1.15 from Azospirillum brasilense
PFams: SGL
300 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165IRV8 Gluconolactonase
316 amino acids: PaperBLAST, CDD, Compare to cluster

Q92RN9 Putative sugar lactone lactonase; EC=3.1.1.-
294 amino acids: PaperBLAST, CDD, Compare to cluster

Shewana3_2088 L-arabinolactonase (EC 3.1.1.15) from Shewanella sp. ANA-3
PFams: SGL
300 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS16915 L-arabinolactonase (EC 3.1.1.15) from Burkholderia phytofirmans PsJN
PFams: SGL
300 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS05225 L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae SmR1
PFams: SGL
292 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_11020 L-arabinolactonase (EC 3.1.1.15) from Pseudomonas simiae WCS417
PFams: SGL
287 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_2118 L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens GW456-L13
PFams: SGL
291 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_413 L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens FW300-N1B4
PFams: SGL
314 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_20235 L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens FW300-N2C3
PFams: SGL
291 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_5966 L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens FW300-N2E2
PFams: SGL
291 amino acids: PaperBLAST, CDD, Compare to cluster