GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for xacD (L-arabinonate dehydratase) in L-arabinose catabolism

Or see other characterized proteins similar to xacD

Or see all steps for L-arabinose catabolism

Or cluster curated proteins matching a keyword

Definition of xacD

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 577-586 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

ARAD_RHILW / B5ZZ34 L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum bv. trifolii (strain WSM2304)
I9XDU6 L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum bv. trifolii
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD, Compare to cluster

ARADA_AZOBR / Q1JUQ1 L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense
PFams: ILVD_EDD
583 amino acids: PaperBLAST, CDD, Compare to cluster

Shewana3_2070 L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp. ANA-3
PFams: ILVD_EDD
586 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS19730 L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans PsJN
PFams: ILVD_EDD
577 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS05205 L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae SmR1
PFams: ILVD_EDD
585 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b20890 L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti 1021
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_11000 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas simiae WCS417
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_3320 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens GW456-L13
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_24585 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens FW300-N2C3
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_609 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens FW300-N2E2
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

Q97VG1 D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
PFams: MR_MLE_N, MR_MLE_C
393 amino acids: PaperBLAST, CDD