Clusters of Characterized Proteins

GapMind for Amino acid biosynthesis

Clusters of Characterized Proteins

Clustering the characterized proteins for argF'B (N-succinylornithine carbamoyltransferase) in L-arginine biosynthesis

Or see other characterized proteins similar to argF'B

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Definition of argF'B

Curated proteins or TIGRFams with EC 2.1.3.11
UniProt sequence L0G4Z0_ECHVK: RecName: Full=N-succinylornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_02235}; EC=2.1.3.11 {ECO:0000256|HAMAP-Rule:MF_02235}; AltName: Full=N-succinyl-L-ornithine transcarbamylase {ECO:0000256|HAMAP-Rule:MF_02235}; Short=SOTCase {ECO:0000256|HAMAP-Rule:MF_02235};
Comment: In, Bacteroides fragilis, argF'B converts N-succinylornithine to N-succinylcitrulline (PMID:16704984). Echvi_3849 (L0G4Z0_ECHVK) also has this activity, as it is rescued by arginine and Echinicola vietnamensis has similar argD'/argE'

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 313-318 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

BT3717 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides thetaiotaomicron VPI-5482
Q8A1E9 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
Q8A1E9 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides fragilis
PFams: OTCace_N, OTCace
318 amino acids: PaperBLAST, CDD, Compare to cluster

SOTC_BACF6 / E1WKT5 N-succinylornithine carbamoyltransferase; N-succinyl-L-ornithine transcarbamylase; SOTCase; EC 2.1.3.11 from Bacteroides fragilis (strain 638R)
PFams: OTCace_N, OTCace
318 amino acids: PaperBLAST, CDD, Compare to cluster

L0G4Z0_ECHVK N-succinylornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_02235}; EC=2.1.3.11 {ECO:0000256|HAMAP-Rule:MF_02235}; N-succinyl-L-ornithine transcarbamylase {ECO:0000256|HAMAP-Rule:MF_02235}; Short=SOTCase {ECO:0000256|HAMAP-Rule:MF_02235}
313 amino acids: PaperBLAST, CDD, Compare to cluster

Echvi_3849 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: OTCace_N, OTCace
313 amino acids: PaperBLAST, CDD, Compare to cluster