Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for arcA (arginine deiminase) in L-arginine catabolism

Or see other characterized proteins similar to arcA

Or see all steps for L-arginine catabolism

Or cluster curated proteins matching a keyword

Definition of arcA

Curated proteins or TIGRFams with EC 3.5.3.6
Ignore hits to GFF1616 when looking for 'other' hits (arginine deiminase (EC 3.5.3.6))
Ignore hits to GFF3434 when looking for 'other' hits (arginine deiminase (EC 3.5.3.6))
Ignore hits to AO353_25635 when looking for 'other' hits (arginine deiminase (EC 3.5.3.6))
Comment: Some diverged members of this family had been reannotated as arginine deiminases, putatively involved in citrulline catabolism by the reverse reaction. However, the reverse reaction is thermodynamically quite unfavorable; more likely, these proteins have a different function

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 408-452 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B5XMC3 arginine deiminase (EC 3.5.3.6) from Streptococcus pyogenes
PFams: Amidinotransf
411 amino acids: PaperBLAST, CDD, Compare to cluster

A7LKB0 arginine deiminase (EC 3.5.3.6) from Pseudomonas plecoglossicida
PFams: Amidinotransf
417 amino acids: PaperBLAST, CDD, Compare to cluster

P13981 arginine deiminase (EC 3.5.3.6) from Pseudomonas aeruginosa
PFams: Amidinotransf
418 amino acids: PaperBLAST, CDD, Compare to cluster

Q2HYA0 arginine deiminase (EC 3.5.3.6) from Lactococcus lactis ssp. lactis
PFams: Amidinotransf
410 amino acids: PaperBLAST, CDD, Compare to cluster

Q8EVF6 arginine deiminase (EC 3.5.3.6) from Mycoplasma penetrans
PFams: Amidinotransf
452 amino acids: PaperBLAST, CDD, Compare to cluster

GI|14349116 arginine deiminase; EC 3.5.3.6 from Enterococcus faecalis
PFams: Amidinotransf
408 amino acids: PaperBLAST, CDD, Compare to cluster

ARCA_STRGC / A8AYL1 Arginine deiminase; ADI; Arginine dihydrolase; AD; EC 3.5.3.6 from Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)
PFams: Amidinotransf
409 amino acids: PaperBLAST, CDD, Compare to cluster

ARCA_STRPY / P0C0B3 Arginine deiminase; ADI; Arginine dihydrolase; AD; Streptococcal acid glycoprotein; EC 3.5.3.6 from Streptococcus pyogenes
PFams: Amidinotransf
411 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

Q27657 arginine deiminase subunit (EC 3.5.3.6) from Giardia intestinalis
Q27657 arginine deiminase (EC 3.5.3.6) from Giardia intestinalis
PFams: Amidinotransf
580 amino acids: PaperBLAST, CDD

ARCA_HALS3 / B0R9X5 Arginine deiminase; ADI; Arginine dihydrolase; AD; EC 3.5.3.6 from Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
PFams: Amidinotransf, Amidinotransf
486 amino acids: PaperBLAST, CDD