Clusters of Characterized Proteins
Clustering the characterized proteins for davD (glutarate semialdehyde dehydrogenase) in L-arginine catabolism
Or see other characterized proteins similar to davD
Or see all steps for L-arginine catabolism
Or cluster curated proteins matching a keyword
Definition of davD
- Curated proteins or TIGRFams with EC 1.2.1.20
- Ignore hits to AO353_11505 when looking for 'other' hits (succinate-semialdehyde dehydrogenase (EC 1.2.1.16))
- Ignore hits to MONOMER-15736 when looking for 'other' hits (NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16))
- Curated sequence Q9I6M5: Glutarate-semialdehyde dehydrogenase; EC 1.2.1.-. glutarate semialdehyde dehydrogenase
- Ignore hits to P25526 when looking for 'other' hits (succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79). succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16. Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; SSDH; Glutarate-semialdehyde dehydrogenase; EC 1.2.1.79; EC 1.2.1.-. succinate-semialdehyde dehydrogenase (NADP+) GabD (EC 1.2.1.79). succinate-semialdehyde dehydrogenase (NADP+) GabD (EC 1.2.1.79))
- Ignore hits to MONOMER-20455 when looking for 'other' hits (succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24))
- Ignore hits to 200453 when looking for 'other' hits (succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16])
- Comment: Ignore some very-similar succinate-semialdehyde dehydrogenases
Fetched 3 sequences
Running BLASTp
Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences
Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism
Cluster 1 480-483 amino acids (not heteromeric)
The first sequence in each cluster is the seed.Q88RC0 glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas putida
PFams: Aldedh
480 amino acids: PaperBLAST, CDD, Compare to cluster
Q9I6M5 glutarate semialdehyde dehydrogenase from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
DAVD_PSEAE / Q9I6M5 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aldedh
483 amino acids: PaperBLAST, CDD, Compare to cluster
PfGW456L13_495 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas fluorescens GW456-L13
PFams: Aldedh
480 amino acids: PaperBLAST, CDD, Compare to cluster