GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for SLC7A13 (sodium-independent aspartate transporter) in L-aspartate catabolism

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Or cluster curated proteins matching a keyword

Definition of SLC7A13

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 470-478 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

S7A13_HUMAN / Q8TCU3 Solute carrier family 7 member 13; Sodium-independent aspartate/glutamate transporter 1; X-amino acid transporter 2 from Homo sapiens (Human)
TC 2.A.3.8.24 / Q8TCU3 Solute carrier family 7 member 13 (Sodium-independent aspartate/glutamate transporter 1) (X-amino acid transporter 2) from Homo sapiens
PFams: AA_permease_2, AA_permease
470 amino acids: PaperBLAST, CDD, Compare to cluster

S7A13_MOUSE / Q91WN3 Solute carrier family 7 member 13; Sodium-independent aspartate/glutamate transporter 1; X-amino acid transporter 2 from Mus musculus (Mouse)
TC 2.A.3.8.8 / Q91WN3 Aspartate/glutamate Na+-independent transporter, AGT1 from Mus musculus (Mouse)
PFams: AA_permease_2, AA_permease
478 amino acids: PaperBLAST, CDD, Compare to cluster