Clusters of Characterized Proteins

Clustering the characterized proteins for aatM (aspartate/asparagine ABC transporter, permease component 2 (AatM)) in L-aspartate catabolism

Or see other characterized proteins similar to aatM

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Definition of aatM

• Curated sequence Q88NY4: PP1069, component of Acidic amino acid uptake porter, AatJMQP
• Curated sequence AO353_16280: ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1
• Curated sequence Pf1N1B4_773: ABC transporter for L-asparagine and L-glutamate, permease subunit 2
• Curated sequence PfGW456L13_4772: ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 2
• Ignore hits to Q9I404 when looking for 'other' hits (Amino acid ABC transporter membrane protein, component of Amino acid transporter, AatJMQP. Probably transports L-glutamic acid, D-glutamine acid, L-glutamine and N-acetyl L-glutamic acid (Johnson et al. 2008). Very similar to 3.A.1.3.19 of P. putida)
• Curated sequence P0AER5: Glutamate/aspartate import permease protein GltK. Glutamate/aspartate transport system permease protein GltK aka B0653, component of Glutamate/aspartate porter. glutamate/aspartate ABC transporter membrane subunit GltK (EC 7.4.2.1). glutamate/aspartate ABC transporter membrane subunit GltK (EC 7.4.2.1)
• Comment: aatM = PP1069 or AO353_16280 or gltK

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 223-224 amino acids (heteromeric)

b0653 glutamate/aspartate ABC transporter membrane subunit GltK (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
P0AER5 glutamate/aspartate ABC transporter membrane subunit GltK (EC 7.4.2.1) from Escherichia coli (strain K12)
GLTK_ECOLI / P0AER5 Glutamate/aspartate import permease protein GltK from Escherichia coli (strain K12)
TC 3.A.1.3.4 / P0AER5 Glutamate/aspartate transport system permease protein GltK aka B0653, component of Glutamate/aspartate porter from Escherichia coli
PFams: BPD_transp_1
Heteromeric, 224 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.3.19 / Q88NY4 PP1069, component of Acidic amino acid uptake porter, AatJMQP from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_4772 ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 2 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_773 ABC transporter for L-asparagine and L-glutamate, permease subunit 2 from Pseudomonas fluorescens FW300-N1B4
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_16280 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 from Pseudomonas fluorescens FW300-N2E3
PFams: BPD_transp_1
Heteromeric, 223 amino acids: PaperBLAST, CDD, Compare to cluster