Clusters of Characterized Proteins

Clustering the characterized proteins for cbpB (cellobiose ABC transporter, substrate-binding component CpbB) in D-cellobiose catabolism

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Definition of cbpB

• UniProt sequence A3DE73: SubName: Full=Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ABN52252.1}; Flags: Precursor;
• Comment: Clostridium thermocellum has two ABC transporters with cellobiose-binding SBPs, see PMID:18952792 (Nataf et al 2009). cbpB = gi 125973535 = WP_011837947.1 = A3DE73 = Cthe_1020 cbpC = gi 125974617 = WP_003516700.1 = Cthe_2128 = A3DHA5 The ATPase component of these systems is not clear, but cbpB is close to permease components Cthe_1019=msdB1=A3DE72 and Cthe_1018=msdB2=A3DE71, cbpC is close to permease components Cthe_2126=A3DHA3 and Cthe_2125=A3DHA2 (the name of those components by Nataf et al is ambiguous)

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (0/1 heteromeric)

A3DE73 Extracellular solute-binding protein family 1; Flags: Precursor
459 amino acids: PaperBLAST, CDD