Clusters of Characterized Proteins

Clustering the characterized proteins for celEIIC (cellobiose PTS system, EII-C component) in D-cellobiose catabolism

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Definition of celEIIC

• Curated sequence P17334: PTS system N,N'-diacetylchitobiose-specific EIIC component; EIIC-Chb; IIcel; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIC component. PTCC aka ChbC aka CELB aka B1737, component of N,N'-diacetylchitobiose (Chb) porter. N,N'-diacetylchitobiose-specific PTS enzyme IIC component (EC 2.7.1.196). N,N'-diacetylchitobiose-specific PTS enzyme IIC component (EC 2.7.1.196)
• Curated sequence Q9CJ32: PTS system cellobiose-specific EIIC component. CelB, component of The cellobiose-specific (PtcA-PtcB-CelB) porter (Kowalczyk et al., 2008 )
• UniProt sequence A0A0H2UNC6: RecName: Full=Permease IIC component {ECO:0000256|PIRNR:PIRNR006351};
• Ignore hits to C4X745 when looking for 'other' hits (PEP-dependent phosphotransferase enzyme II, component of N,N'-diacetylchitobiose (cellobiose) PTS permease, CelABC (IIABC))
• Ignore hits to Q8L3C2 when looking for 'other' hits (protein-Npi-phosphohistidine-N,N'-diacetylchitobiose phosphotransferase (EC 2.7.1.196). ChbC, component of The N,N' -diacetylchitobiose Enzyme II (Toratani et al., 2008) (>80% identical to the E. coli enzyme (4.A.3.2.1)))

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 448-494 amino acids (2/3 heteromeric)

b1737 N,N'-diacetylchitobiose-specific PTS enzyme IIC component (EC 2.7.1.196) from Escherichia coli K-12 substr. MG1655
P17334 N,N'-diacetylchitobiose-specific PTS enzyme IIC component (EC 2.7.1.196) from Escherichia coli (strain K12)
PTQC_ECOLI / P17334 PTS system N,N'-diacetylchitobiose-specific EIIC component; EIIC-Chb; IIcel; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIC component from Escherichia coli (strain K12)
TC 4.A.3.2.1 / P17334 PTCC aka ChbC aka CELB aka B1737, component of N,N'-diacetylchitobiose (Chb) porter from Escherichia coli
PFams: PTS_EIIC
Heteromeric, 452 amino acids: PaperBLAST, CDD, Compare to cluster

CELB_LACLA / Q9CJ32 PTS system cellobiose-specific EIIC component from Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis)
TC 4.A.3.2.4 / Q9CJ32 CelB, component of The cellobiose-specific (PtcA-PtcB-CelB) porter (Kowalczyk et al., 2008 ) from Lactococcus lactis subsp. lactis (Streptococcus lactis)
PFams: PTS_EIIC
Heteromeric, 494 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0H2UNC6 Permease IIC component
448 amino acids: PaperBLAST, CDD, Compare to cluster