GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gdh (quinoprotein glucose dehydrogenase) in D-cellobiose catabolism

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Definition of gdh

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 352-371 amino acids (not heteromeric)

I7A144 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus
PFams: GSDH
352 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZUN8 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum
PFams: GSDH
371 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 796-796 amino acids (not heteromeric)

D4P700 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis
PFams: PQQ_2, PQQ, PQQ, PQQ, PQQ, PQQ, PQQ_2, PQQ
796 amino acids: PaperBLAST, CDD, Compare to cluster

b0124 quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli K-12 substr. MG1655
P15877 quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli (strain K12)
DHG_ECOLI / P15877 Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli (strain K12)
GB|BAB96699.1 quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli K12
ECOCYC|GLUCDEHYDROG-MONOMER glucose dehydrogenase from Escherichia coli K12
PFams: PQQ_2, PQQ, PQQ, PQQ, PQQ, PQQ, PQQ_2, PQQ
796 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

P13650 soluble quinoprotein glucose dehydrogenase monomer (EC 1.1.99.35) from Acinetobacter calcoaceticus
DHGB_ACICA / P13650 Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus
P13650 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2); soluble quinoprotein glucose dehydrogenase (EC 1.1.99.35) from Acinetobacter calcoaceticus
PFams: GSDH, GSDH
478 amino acids: PaperBLAST, CDD