GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gtsB (glucose ABC transporter, permease component 1 (GtsB)) in D-cellobiose catabolism

Or see other characterized proteins similar to gtsB

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Definition of gtsB

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 293-302 amino acids (3/4 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.30 / Q88P37 GtsB (GLcF), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KPZ4 ABC transporter permease
293 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_22140 ABC transporter for D-Glucose-6-Phosphate, permease component 2 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1895 ABC transporter for D-Galactose and D-Glucose, permease component 1 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (1/1 heteromeric)

TC 3.A.1.1.24 / Q72KX3 Glucose transport system permease protein aka TT_C0327, component of The glucose/mannose porter TTC0326-8 plus MalK1 (ABC protein, shared with 3.A.1.1.25) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: BPD_transp_1
Heteromeric, 369 amino acids: PaperBLAST, CDD