GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gtsC (glucose ABC transporter, permease component 2 (GtsC)) in D-cellobiose catabolism

Or see other characterized proteins similar to gtsC

Or see all steps for D-cellobiose catabolism

Or cluster curated proteins matching a keyword

Definition of gtsC

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 268-289 amino acids (4/5 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.24 / Q72KX4 Sugar transport system permease protein aka TT_C0326, component of The glucose/mannose porter TTC0326-8 plus MalK1 (ABC protein, shared with 3.A.1.1.25) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: BPD_transp_1
Heteromeric, 268 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.30 / Q88P36 GtsC (GLcG), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KQ00 Sugar ABC transporter permease
289 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_22135 ABC transporter for D-Glucose-6-Phosphate, permease component 1 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1896 ABC transporter for D-Galactose and D-Glucose, permease component 2 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD, Compare to cluster