Clusters of Characterized Proteins

Clustering the characterized proteins for msiK (cellobiose ABC transporter, ATPase component) in D-cellobiose catabolism

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Definition of msiK

• Curated sequence P96483: MsiK protein, component of The cellobiose/cellotriose (and possibly higher cellooligosaccharides), CebEFGMsiK [MsiK functions to energize several ABC transporters including those for maltose/maltotriose and trehalose]
• Ignore hits to Q9L0Q1 when looking for 'other' hits (Diacetylchitobiose uptake system ATP-binding protein MsiK; EC 7.5.2.-. ABC transporter ATP-binding protein, component of The N,N'-diacetylchitobiose uptake transporter, DasABC/MsiK (MsiK energizes several ABC transporters (see 3.A.1.1.23)))
• Comment: Ignore msiK from S. coelicolor (msiK is shared across ABC transporters)

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (1/1 heteromeric)

TC 3.A.1.1.23 / P96483 MsiK protein, component of The cellobiose/cellotriose (and possibly higher cellooligosaccharides), CebEFGMsiK [MsiK functions to energize several ABC transporters including those for maltose/maltotriose and trehalose] from Streptomyces reticuli
PFams: ABC_tran, OB_MalK, TOBE
Heteromeric, 377 amino acids: PaperBLAST, CDD