GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for pgmA (alpha-phosphoglucomutase) in D-cellobiose catabolism

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Definition of pgmA

Fetched 34 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 33 of these sequences

Found 4 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 554-637 amino acids (not heteromeric)

A0A2H5BEG8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Ganoderma lucidum
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
566 amino acids: PaperBLAST, CDD, Compare to cluster

A8N8Z1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Coprinopsis cinerea
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III
583 amino acids: PaperBLAST, CDD, Compare to cluster

C6L2E2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Toxoplasma gondii
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III
637 amino acids: PaperBLAST, CDD, Compare to cluster

O49299 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Arabidopsis thaliana
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
583 amino acids: PaperBLAST, CDD, Compare to cluster

P36871 phosphoglucomutase-1 (EC 5.4.2.2) from Homo sapiens
PGM1_HUMAN / P36871 Phosphoglucomutase-1; PGM 1; Glucose phosphomutase 1; EC 5.4.2.2 from Homo sapiens (Human)
P36871 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Homo sapiens
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
562 amino acids: PaperBLAST, CDD, Compare to cluster

P93804 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Zea mays
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
583 amino acids: PaperBLAST, CDD, Compare to cluster

P93805 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Zea mays
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
583 amino acids: PaperBLAST, CDD, Compare to cluster

Q4QCF1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Leishmania major
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
589 amino acids: PaperBLAST, CDD, Compare to cluster

Q670S5 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Trypanosoma cruzi
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
587 amino acids: PaperBLAST, CDD, Compare to cluster

Q9SCY0 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Arabidopsis thaliana
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
623 amino acids: PaperBLAST, CDD, Compare to cluster

Q9SGC1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Arabidopsis thaliana
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
585 amino acids: PaperBLAST, CDD, Compare to cluster

PGM_SCHPO / O74374 Phosphoglucomutase; PGM; Glucose phosphomutase; EC 5.4.2.2 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
554 amino acids: PaperBLAST, CDD, Compare to cluster

PGM1_RABIT / P00949 Phosphoglucomutase-1; PGM 1; Glucose phosphomutase 1; EC 5.4.2.2 from Oryctolagus cuniculus (Rabbit)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
562 amino acids: PaperBLAST, CDD, Compare to cluster

P33401 phosphoglucomutase-1 (EC 5.4.2.2) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PGM1_YEAST / P33401 Phosphoglucomutase 1; PGM 1; Glucose phosphomutase 1; EC 5.4.2.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
570 amino acids: PaperBLAST, CDD, Compare to cluster

P37012 phosphoglucomutase-2 (EC 5.4.2.2) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PGM2_YEAST / P37012 Phosphoglucomutase 2; PGM 2; D-glucose-1,6-diphosphate:D-glucose-1-phosphate phosphotransferase; Glucose phosphomutase 2; EC 5.4.2.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
569 amino acids: PaperBLAST, CDD, Compare to cluster

PGM1_RAT / P38652 Phosphoglucomutase-1; PGM 1; Glucose phosphomutase 1; EC 5.4.2.2 from Rattus norvegicus (Rat)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
562 amino acids: PaperBLAST, CDD, Compare to cluster

PGM1_PARTE / P47244 Phosphoglucomutase-1; PGM 1; Glucose phosphomutase 1; Parafusin; Pf; pp63; EC 5.4.2.2 from Paramecium tetraurelia
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
572 amino acids: PaperBLAST, CDD, Compare to cluster

PGM_EMENI / Q9P931 Phosphoglucomutase; PGM; Glucose phosphomutase; EC 5.4.2.2 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
CH_122044 phosphoglucomutase; EC 5.4.2.2 from Emericella nidulans
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
556 amino acids: PaperBLAST, CDD, Compare to cluster

PGM_DROME / Q9VUY9 Phosphoglucomutase; PGM; Glucose phosphomutase; EC 5.4.2.2 from Drosophila melanogaster (Fruit fly)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
560 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 450-463 amino acids (not heteromeric)

PGMMM_THEKO / Q68BJ6 Phosphoglucomutase/phosphomannomutase; PGM/PMM; EC 5.4.2.2; EC 5.4.2.8 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
456 amino acids: PaperBLAST, CDD, Compare to cluster

M1T754 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Sphingomonas sanxanigenens
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
460 amino acids: PaperBLAST, CDD, Compare to cluster

P26276 phosphomannomutase (EC 5.4.2.2; EC 5.4.2.8) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
ALGC_PSEAE / P26276 Phosphomannomutase/phosphoglucomutase; PMM / PGM; EC 5.4.2.2; EC 5.4.2.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P26276 phosphomannomutase (EC 5.4.2.8) from Pseudomonas aeruginosa
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
463 amino acids: PaperBLAST, CDD, Compare to cluster

Q8PGN7 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Xanthomonas citri pv. citri
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
450 amino acids: PaperBLAST, CDD, Compare to cluster

Q980S1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2); phosphomannomutase (EC 5.4.2.8) from Saccharolobus solfataricus
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
455 amino acids: PaperBLAST, CDD, Compare to cluster

O58651 phosphomannose mutase (EC 5.4.2.8) from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
455 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 552-620 amino acids (not heteromeric)

C6L2F4 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Toxoplasma gondii
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
596 amino acids: PaperBLAST, CDD, Compare to cluster

P18159 α-phosphoglucomutase (EC 5.4.2.2) from Bacillus subtilis (strain 168)
PGCA_BACSU / P18159 Phosphoglucomutase; PGM; Alpha-phosphoglucomutase; Glucose phosphomutase; EC 5.4.2.2 from Bacillus subtilis (strain 168)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
581 amino acids: PaperBLAST, CDD, Compare to cluster

PGCA_STAA8 / Q2FVC1 Phosphoglucomutase; PGM; Alpha-phosphoglucomutase; Glucose phosphomutase; EC 5.4.2.2 from Staphylococcus aureus (strain NCTC 8325)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
552 amino acids: PaperBLAST, CDD, Compare to cluster

PGM2_MOUSE / Q7TSV4 Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-1; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Mus musculus (Mouse)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
620 amino acids: PaperBLAST, CDD, Compare to cluster

Q96G03 phosphoglucomutase-2 (EC 5.4.2.2; EC 5.4.2.7) from Homo sapiens
PGM2_HUMAN / Q96G03 Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Homo sapiens (Human)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
612 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 546-547 amino acids (not heteromeric)

A0A0H3NJ17 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Salmonella enterica subsp. enterica serovar Typhimurium
Q8ZQW9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
546 amino acids: PaperBLAST, CDD, Compare to cluster

I6Y2G3 phosphoglucomutase (EC 5.4.2.2) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
I6Y2G3 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Mycobacterium tuberculosis
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
547 amino acids: PaperBLAST, CDD, Compare to cluster

b0688 phosphoglucomutase (EC 5.4.2.2) from Escherichia coli K-12 substr. MG1655
P36938 phosphoglucomutase (EC 5.4.2.2) from Escherichia coli (strain K12)
PGM_ECOLI / P36938 Phosphoglucomutase; PGM; Glucose phosphomutase; EC 5.4.2.2 from Escherichia coli (strain K12)
GB|ABB65241.1 phosphoglucomutase; EC 5.4.2.2 from Escherichia coli K12
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
546 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

Q00G41 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (EC 5.4.2.2) from Lactococcus lactis
PFams: Hydrolase_3, PMM
252 amino acids: PaperBLAST, CDD