Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for arcB (ornithine carbamoyltransferase) in L-citrulline catabolism

Or see other characterized proteins similar to arcB

Or see all steps for L-citrulline catabolism

Or cluster curated proteins matching a keyword

Definition of arcB

Curated proteins or TIGRFams with EC 2.1.3.3
Comment: arcB forms carbamoyl-phosphate and ornithine

Fetched 30 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 30 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 295-375 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

O93656 ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi
PFams: OTCace_N, OTCace
317 amino acids: PaperBLAST, CDD, Compare to cluster

P00480 Ornithine carbamoyltransferase, mitochondrial (EC 2.1.3.3) from Homo sapiens
OTC_HUMAN / P00480 Ornithine carbamoyltransferase, mitochondrial; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Homo sapiens (Human)
P00480 ornithine carbamoyltransferase (EC 2.1.3.3) from Homo sapiens
PFams: OTCace_N, OTCace
354 amino acids: PaperBLAST, CDD, Compare to cluster

OTC_MYCBO / P0A5M9 Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
OTC_MYCTU / P9WIT9 Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P0A5M9 ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis variant bovis
P9WIT9 ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis
PFams: OTCace_N, OTCace
307 amino acids: PaperBLAST, CDD, Compare to cluster

OTC2A_PSESH / P68747 Ornithine carbamoyltransferase 2, anabolic; OTCase 2; Ornithine carbamoyltransferase 2, phaseolotoxin-insensitive; Phaseolotoxin-resistant ornithine carbamoyltransferase; Toxin-resistant enzyme; ROCT; EC 2.1.3.3 from Pseudomonas savastanoi pv. phaseolicola (Pseudomonas syringae pv. phaseolicola)
P68747 ornithine carbamoyltransferase (EC 2.1.3.3) from Pseudomonas savastanoi pv. phaseolicola
PFams: OTCace_N, OTCace
327 amino acids: PaperBLAST, CDD, Compare to cluster

OTCA_PYRFU / Q51742 Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q51742 ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus
PFams: OTCace_N, OTCace
315 amino acids: PaperBLAST, CDD, Compare to cluster

Q5SJ15 ornithine carbamoyltransferase (EC 2.1.3.3) from Thermus thermophilus
PFams: OTCace_N, OTCace
301 amino acids: PaperBLAST, CDD, Compare to cluster

PTC_ENTFA / Q837U7 Putrescine carbamoyltransferase; PTC; PTCase; Agmatine catabolism protein B; Putrescine transcarbamoylase; Putrescine transcarbamylase; EC 2.1.3.6 from Enterococcus faecalis (strain ATCC 700802 / V583)
Q837U7 ornithine carbamoyltransferase (EC 2.1.3.3); putrescine carbamoyltransferase (EC 2.1.3.6) from Enterococcus faecalis
PFams: OTCace_N, OTCace
339 amino acids: PaperBLAST, CDD, Compare to cluster

Q98BB6 ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti
PFams: OTCace_N, OTCace
303 amino acids: PaperBLAST, CDD, Compare to cluster

Q9PNU6 ornithine carbamoyltransferase (EC 2.1.3.3) from Campylobacter jejuni
PFams: OTCace_N, OTCace
306 amino acids: PaperBLAST, CDD, Compare to cluster

b4254 ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli K-12 substr. MG1655
P04391 ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli (strain K12)
OTC1_ECOLI / P04391 Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli (strain K12)
GB|AAA23483.1 ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli K12
PFams: OTCace_N, OTCace
334 amino acids: PaperBLAST, CDD, Compare to cluster

GI|168017 ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Emericella nidulans
PFams: OTCace_N, OTCace
359 amino acids: PaperBLAST, CDD, Compare to cluster

OTC_SCHPO / P31317 Ornithine carbamoyltransferase, mitochondrial; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
GI|1204211 ornithine carbamoyltransferase Arg3; EC 2.1.3.3 from Schizosaccharomyces pombe
PFams: OTCace_N, OTCace
327 amino acids: PaperBLAST, CDD, Compare to cluster

OTC_MYCS2 / A0QYS8 Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis)
PFams: OTCace_N, OTCace
307 amino acids: PaperBLAST, CDD, Compare to cluster

P05150 ornithine carbamoyltransferase (EC 2.1.3.3) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OTC_YEAST / P05150 Ornithine carbamoyltransferase; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: OTCace_N, OTCace
338 amino acids: PaperBLAST, CDD, Compare to cluster

b0273 CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli K-12 substr. MG1655
P06960 CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli (strain K12)
OTC2_ECOLI / P06960 Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli (strain K12)
PFams: OTCace_N, OTCace
334 amino acids: PaperBLAST, CDD, Compare to cluster

OTCC_PSEAE / P08308 Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: OTCace_N, OTCace
336 amino acids: PaperBLAST, CDD, Compare to cluster

OTCA_PSEAE / P11724 Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: OTCace_N, OTCace
305 amino acids: PaperBLAST, CDD, Compare to cluster

OTC_MOUSE / P11725 Ornithine carbamoyltransferase, mitochondrial; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Mus musculus (Mouse)
PFams: OTCace_N, OTCace
354 amino acids: PaperBLAST, CDD, Compare to cluster

OTC_SHEEP / P84010 Ornithine carbamoyltransferase, mitochondrial; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Ovis aries (Sheep)
PFams: OTCace_N, OTCace
355 amino acids: PaperBLAST, CDD, Compare to cluster

OTC_THET2 / P96134 Ornithine carbamoyltransferase; OTC; OTCase; EC 2.1.3.3 from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: OTCace_N, OTCace
301 amino acids: PaperBLAST, CDD, Compare to cluster

OTC1A_PSESH / Q02047 Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi pv. phaseolicola (Pseudomonas syringae pv. phaseolicola)
PFams: OTCace_N, OTCace
306 amino acids: PaperBLAST, CDD, Compare to cluster

Q48296 ArcB (EC 2.1.3.3) from Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
OTCC_HALSA / Q48296 Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Q48296 ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum
PFams: OTCace_N, OTCace
295 amino acids: PaperBLAST, CDD, Compare to cluster

PTC_STRMU / Q8DW19 Putrescine carbamoyltransferase; PTC; PTCase; Putrescine transcarbamoylase; Putrescine transcarbamylase; EC 2.1.3.6 (from HMM only) from Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
PFams: OTCace_N, OTCace
339 amino acids: PaperBLAST, CDD, Compare to cluster

OTCC_MYCPE / Q8EVF5 Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Mycoplasma penetrans (strain HF-2)
PFams: OTCace_N, OTCace
342 amino acids: PaperBLAST, CDD, Compare to cluster

OTCC_LACHI / Q8G998 Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Lactobacillus hilgardii
PFams: OTCace_N, OTCace
343 amino acids: PaperBLAST, CDD, Compare to cluster

OTC_MORAB / Q9K4Y9 Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi
PFams: OTCace_N, OTCace
301 amino acids: PaperBLAST, CDD, Compare to cluster

OTC_CHICK / Q9YHY9 Ornithine carbamoyltransferase, mitochondrial; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Gallus gallus (Chicken)
PFams: OTCace_N, OTCace
354 amino acids: PaperBLAST, CDD, Compare to cluster

O50039 ornithine carbamoyltransferase (EC 2.1.3.3) from Arabidopsis thaliana
PFams: OTCace_N, OTCace
375 amino acids: PaperBLAST, CDD, Compare to cluster

P75473 ornithine carbamoyltransferase, catabolic (EC 2.1.3.3) from Mycoplasma pneumoniae (strain ATCC 29342 / M129)
PFams: OTCace_N, OTCace
346 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS07185 Ornithine carbamoyltransferase (EC 2.1.3.3) from Herbaspirillum seropedicae SmR1
PFams: OTCace_N, OTCace
304 amino acids: PaperBLAST, CDD, Compare to cluster