GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for astD (succinylglutamate semialdehyde dehydrogenase) in L-citrulline catabolism

Or see other characterized proteins similar to astD

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Definition of astD

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 486-492 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b1746 aldehyde dehydrogenase (EC 1.2.1.71) from Escherichia coli K-12 substr. MG1655
P76217 aldehyde dehydrogenase (EC 1.2.1.71) from Escherichia coli (strain K12)
ASTD_ECOLI / P76217 N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 from Escherichia coli (strain K12)
P76217 aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Escherichia coli
RF|NP_416260.1 N-succinylglutamate 5-semialdehyde dehydrogenase; EC 1.2.1.71 from Escherichia coli K12
PFams: Aldedh
492 amino acids: PaperBLAST, CDD, Compare to cluster

ASTD_PSEAE / O50174 N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
CH_107314 succinylglutamate-semialdehyde dehydrogenase; EC 1.2.1.71 from Pseudomonas aeruginosa
PFams: Aldedh
487 amino acids: PaperBLAST, CDD, Compare to cluster

ASTD_SALTY / Q8ZPV0 N-succinylglutamate 5-semialdehyde dehydrogenase; Succinylglutamic semialdehyde dehydrogenase; SGSD; EC 1.2.1.71 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: Aldedh
492 amino acids: PaperBLAST, CDD, Compare to cluster

SO0619 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) from Shewanella oneidensis MR-1
PFams: Aldedh
487 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_3009 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) from Shewanella amazonensis SB2B
PFams: Aldedh
486 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1974 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) from Pseudomonas fluorescens GW456-L13
PFams: Aldedh
488 amino acids: PaperBLAST, CDD, Compare to cluster