Clusters of Characterized Proteins

Clustering the characterized proteins for patA (putrescine aminotransferase (PatA/SpuC)) in L-citrulline catabolism

Or see other characterized proteins similar to patA

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Definition of patA

• Curated proteins or TIGRFams with EC 2.6.1.82
• Curated sequence MONOMER-17: putrescine-pyruvate transaminase (EC 2.6.1.113). Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113. putrescine aminotransferase (EC 2.6.1.113)
• Curated proteins or TIGRFams with EC 2.6.1.113
• Ignore hits to items matching 2.6.1.19 when looking for 'other' hits
• Comment: Since patA and putrescine-pyruvate transaminase (spuC) perform similar reactions and produce gamma-aminobutyraldehyde (4-aminobutanal), they are listed together. Many close homologs of patA are GABA aminotransferases (EC 2.6.1.19), so ignore those.

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (0/2 heteromeric)

b3073 putrescine aminotransferase (EC 2.6.1.29) from Escherichia coli K-12 substr. MG1655
P42588 putrescine aminotransferase (EC 2.6.1.29) from Escherichia coli (strain K12)
PAT_ECOLI / P42588 Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.- from Escherichia coli (strain K12)
P42588 putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli
PFams: Aminotran_3
459 amino acids: PaperBLAST, CDD

Q9I6J2 putrescine aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
SPUC_PSEAE / Q9I6J2 Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6J2 putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa
PFams: Aminotran_3
456 amino acids: PaperBLAST, CDD