GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for atoA (acetoacetyl-CoA transferase, A subunit) in 2-deoxy-D-ribonate catabolism

Or see other characterized proteins similar to atoA

Or see all steps for 2-deoxy-D-ribonate catabolism

Or cluster curated proteins matching a keyword

Definition of atoA

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 220-232 amino acids (3/4 heteromeric)

The first sequence in each cluster is the seed.

P56006 succinyl-CoA:acetoacetate CoA-transferase subunit A (EC 2.8.3.5) from Helicobacter pylori (strain ATCC 700392 / 26695)
SCOA_HELPY / P56006 Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A; Succinyl-CoA:3-oxoacid CoA-transferase; OXCT A; EC 2.8.3.5 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
PFams: CoA_trans
Heteromeric, 232 amino acids: PaperBLAST, CDD, Compare to cluster

b2221 acetyl-CoA:acetoacetyl-CoA transferase subunit α from Escherichia coli K-12 substr. MG1655
P76458 acetyl-CoA:acetoacetyl-CoA transferase subunit α from Escherichia coli (strain K12)
PFams: CoA_trans
220 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_2111 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A from Pseudomonas fluorescens FW300-N2E2
PFams: CoA_trans
Heteromeric, 232 amino acids: PaperBLAST, CDD, Compare to cluster