GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for garK (glycerate 2-kinase) in 2-deoxy-D-ribose catabolism

Or see other characterized proteins similar to garK

Or see all steps for 2-deoxy-D-ribose catabolism

Or cluster curated proteins matching a keyword

Definition of garK

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 398-440 amino acids (not heteromeric)

GCK_PYRHO / O58231 Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
O58231 glycerate 2-kinase (EC 2.7.1.165) from Pyrococcus horikoshii
PFams: DUF4147, MOFRL
440 amino acids: PaperBLAST, CDD, Compare to cluster

Q703V9 glycerate 2-kinase (EC 2.7.1.165) from Thermoproteus tenax
PFams: DUF4147, MOFRL
398 amino acids: PaperBLAST, CDD, Compare to cluster

Q7LXP1 glycerate 2-kinase (EC 2.7.1.165) from Saccharolobus solfataricus
PFams: DUF4147, MOFRL
400 amino acids: PaperBLAST, CDD, Compare to cluster

Q96YZ3 glycerate 2-kinase monomer (EC 2.7.1.165) from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GCK_SULTO / Q96YZ3 Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii)
Q96YZ3 glycerate 2-kinase (EC 2.7.1.165) from Sulfurisphaera tokodaii
PFams: DUF4147, MOFRL
399 amino acids: PaperBLAST, CDD, Compare to cluster

GCK_THEMA / Q9X1S1 D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Q9X1S1 glycerate 2-kinase (EC 2.7.1.165) from Thermotoga maritima
PFams: DUF4147, MOFRL
417 amino acids: PaperBLAST, CDD, Compare to cluster

GCK_PICTO / Q6KZ25 Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
PFams: DUF4147, MOFRL
415 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_1178 D-glycerate 2-kinase (EC 2.7.1.-) from Pseudomonas stutzeri RCH2
PFams: DUF4147, MOFRL
423 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 371-381 amino acids (not heteromeric)

b3124 glycerate 2-kinase 1 (EC 2.7.1.165) from Escherichia coli K-12 substr. MG1655
P23524 glycerate 2-kinase 1 (EC 2.7.1.165) from Escherichia coli (strain K12)
GLXK1_ECOLI / P23524 Glycerate 2-kinase; Glycerate kinase 1; GK1; EC 2.7.1.165 from Escherichia coli (strain K12)
P23524 glycerate 2-kinase (EC 2.7.1.165) from Escherichia coli K-12
PFams: Gly_kinase
381 amino acids: PaperBLAST, CDD, Compare to cluster

P73408 glycerate 2-kinase (EC 2.7.1.165) from Synechocystis sp.
PFams: Gly_kinase
371 amino acids: PaperBLAST, CDD, Compare to cluster

b0514 glycerate 2-kinase 2 (EC 2.7.1.165) from Escherichia coli K-12 substr. MG1655
P77364 glycerate 2-kinase 2 (EC 2.7.1.165) from Escherichia coli (strain K12)
GLXK2_ECOLI / P77364 Glycerate 3-kinase; D-Glycerate-3-kinase; Glycerate kinase 2; GK2; EC 2.7.1.31 from Escherichia coli (strain K12)
P77364 glycerate 2-kinase (EC 2.7.1.165) from Escherichia coli K-12
GB|AP_001162.1 glycerate kinase; EC 2.7.1.31 from Escherichia coli K12
PFams: Gly_kinase
381 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1N7UI49 glycerate 2-kinase (EC 2.7.1.165) from Pseudomonas simiae
PFams: Gly_kinase
380 amino acids: PaperBLAST, CDD, Compare to cluster