Clusters of Characterized Proteins

Clustering the characterized proteins for fucD (L-fuconate dehydratase) in L-fucose catabolism

Or see other characterized proteins similar to fucD

Or see all steps for L-fucose catabolism

Or cluster curated proteins matching a keyword

Definition of fucD

• Curated proteins or TIGRFams with EC 4.2.1.68
• UniProt sequence D8J108: RecName: Full=L-fuconate dehydratase {ECO:0000256|ARBA:ARBA00014265}; EC=4.2.1.68 {ECO:0000256|ARBA:ARBA00013142};
• Ignore hits to BPHYT_RS34235 when looking for 'other' hits (putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90))
• Comment: HSERO_RS05235 (D8J108) is important for fucose utilization. Ignore the putative accessory protein BPHYT_RS34235.

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 425-452 amino acids (not heteromeric)

G3Y683 L-fuconate dehydratase (EC 4.2.1.68) from Aspergillus niger
PFams: MR_MLE_N, MR_MLE_C
452 amino acids: PaperBLAST, CDD, Compare to cluster

ENOF1_HUMAN / Q7L5Y1 Mitochondrial enolase superfamily member 1; Antisense RNA to thymidylate synthase; rTS; L-fuconate dehydratase; EC 4.2.1.68 from Homo sapiens (Human)
PFams: MR_MLE_N, MR_MLE_C
443 amino acids: PaperBLAST, CDD, Compare to cluster

FUCD_XANCP / Q8P3K2 L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
PFams: MR_MLE_N, MR_MLE_C
441 amino acids: PaperBLAST, CDD, Compare to cluster

D8J108 L-fuconate dehydratase; EC=4.2.1.68
425 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

BPHYT_RS34230 L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans PsJN
PFams: GD_AH_C
431 amino acids: PaperBLAST, CDD