GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for fucO (L-lactaldehyde reductase) in L-fucose catabolism

Or see other characterized proteins similar to fucO

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Or cluster curated proteins matching a keyword

Definition of fucO

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 382-384 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

RF|NP_417279 propanediol oxidoreductase (from HMM only) from Escherichia coli K12
PFams: Fe-ADH, Fe-ADH_2
383 amino acids: PaperBLAST, CDD, Compare to cluster

b2799 L-1,2-propanediol oxidoreductase (EC 1.1.1.77) from Escherichia coli K-12 substr. MG1655
P0A9S1 L-1,2-propanediol oxidoreductase (EC 1.1.1.77) from Escherichia coli (strain K12)
FUCO_ECOLI / P0A9S1 Lactaldehyde reductase; Propanediol oxidoreductase; EC 1.1.1.77 from Escherichia coli (strain K12)
PFams: Fe-ADH, Fe-ADH_2
382 amino acids: PaperBLAST, CDD, Compare to cluster

Q8A199 Lactaldehyde reductase
384 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZKS2 L-lactaldehyde reductase (EC 1.1.1.77) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: Fe-ADH, Fe-ADH_2
382 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

Q12177 NADH-dependent aldehyde reductase (EC 1.1.1.77; EC 1.1.1.244; EC 1.1.1.1) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PFams: Epimerase, NmrA, GDP_Man_Dehyd, 3Beta_HSD, NAD_binding_10
298 amino acids: PaperBLAST, CDD