GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for HP1174 (Na+-dependent galactose transporter) in D-galactose catabolism

Or see other characterized proteins similar to HP1174

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Or cluster curated proteins matching a keyword

Definition of HP1174

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 407-412 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

TC 2.A.1.7.7 / O25788 The Na+-dependent sugar transporter, HP1174 (transports glucose, galactose, mannose and 2-deoxyglucose (Psakis et al. 2009)). (most similar to 2.A.1.7.2; 49% identity) from Helicobacter pylori
PFams: MFS_1
407 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.1.7.2 / P0C105 Glucose/galactose porter from Brucella abortus
PFams: MFS_1
412 amino acids: PaperBLAST, CDD, Compare to cluster