GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for garD (meso-galactarate dehydratase (L-threo-forming) GarD) in D-galacturonate catabolism

Or see other characterized proteins similar to garD

Or see all steps for D-galacturonate catabolism

Or cluster curated proteins matching a keyword

Definition of garD

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 517-523 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b3128 galactarate dehydratase (EC 4.2.1.42) from Escherichia coli K-12 substr. MG1655
P39829 galactarate dehydratase (EC 4.2.1.42) from Escherichia coli (strain K12)
GARD_ECOLI / P39829 Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli (strain K12)
PFams: SAF, GD_AH_C
523 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS15800 Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae SmR1
PFams: SAF, GD_AH_C
522 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_04210 Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae WCS417
PFams: SAF, GD_AH_C
517 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

TAGAD_SALTY / Q8ZL58 L-talarate/galactarate dehydratase; TalrD/GalrD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8ZL58 L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: MR_MLE_N, MR_MLE_C
398 amino acids: PaperBLAST, CDD