GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for uxaB (tagaturonate reductase) in D-galacturonate catabolism

Or see other characterized proteins similar to uxaB

Or see all steps for D-galacturonate catabolism

Or cluster curated proteins matching a keyword

Definition of uxaB

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 472-503 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A9QSF6 tagaturonate reductase (EC 1.1.1.58) from Lactococcus lactis
PFams: Mannitol_dh, Mannitol_dh_C
472 amino acids: PaperBLAST, CDD, Compare to cluster

b1521 tagaturonate reductase (EC 1.1.1.58) from Escherichia coli K-12 substr. MG1655
P0A6L7 tagaturonate reductase (EC 1.1.1.58) from Escherichia coli (strain K12)
PFams: Mannitol_dh, Mannitol_dh_C
483 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS19880 Altronate oxidoreductase (EC 1.1.1.58) from Pedobacter sp. GW460-11-11-14-LB5
PFams: Mannitol_dh, Mannitol_dh_C
503 amino acids: PaperBLAST, CDD, Compare to cluster