Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for gntK (D-gluconate kinase) in D-gluconate catabolism

Or see other characterized proteins similar to gntK

Or see all steps for D-gluconate catabolism

Or cluster curated proteins matching a keyword

Definition of gntK

Curated proteins or TIGRFams with EC 2.7.1.12
Curated sequence GFF2080: fusion of gluconokinase and the small permease component of the D-gluconate TRAP transporter
Ignore hits to Q61036 when looking for 'other' hits (Serine/threonine-protein kinase PAK 3; Beta-PAK; CDC42/RAC effector kinase PAK-B; p21-activated kinase 3; PAK-3; EC 2.7.11.1. gluconokinase (EC 2.7.1.12); non-specific serine/threonine protein kinase (EC 2.7.11.1))
Ignore hits to Q29502 when looking for 'other' hits (gluconokinase (EC 2.7.1.12))
Curated sequence CH_125646: gluconokinase
Comment: Psest_2123 (GFF2080) is a fusion of the TRAP component and gluconate kinase (but was not given the EC number) CH_125646 is annotated as gluconokinase but was not given the EC number

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 9 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 165-193 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b3437 D-gluconate kinase, thermostable (EC 2.7.1.12) from Escherichia coli K-12 substr. MG1655
P46859 D-gluconate kinase, thermostable (EC 2.7.1.12) from Escherichia coli (strain K12)
CH_003728 gluconokinase; EC 2.7.1.12 from Escherichia coli K12
PFams: AAA_33, APS_kinase, SKI
175 amino acids: PaperBLAST, CDD, Compare to cluster

Q8NMT0 gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum
PFams: AAA_18, SKI
167 amino acids: PaperBLAST, CDD, Compare to cluster

GI|1204213 gluconokinase from Schizosaccharomyces pombe
PFams: AAA_33, AAA, AAA_18, AAA_17, Cytidylate_kin, SKI
193 amino acids: PaperBLAST, CDD, Compare to cluster

GNTK_YEAST / Q03786 Probable gluconokinase; Gluconate kinase; EC 2.7.1.12 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: APS_kinase, AAA_18
193 amino acids: PaperBLAST, CDD, Compare to cluster

GCNK_GLUOX / Q5FQ97 Gluconokinase; Gluconate kinase; EC 2.7.1.12 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans)
PFams: AAA_33, SKI
178 amino acids: PaperBLAST, CDD, Compare to cluster

b4268 D-gluconate kinase, thermosensitive (EC 2.7.1.12) from Escherichia coli K-12 substr. MG1655
P39208 D-gluconate kinase, thermosensitive (EC 2.7.1.12) from Escherichia coli (strain K12)
GB|AAC77225.1 gluconokinase; EC 2.7.1.12 from Escherichia coli K12
PFams: SKI
187 amino acids: PaperBLAST, CDD, Compare to cluster

Q5T6J7 gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7 gluconokinase (EC 2.7.1.12) from Homo sapiens
PFams: SKI
187 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS16720 Gluconokinase (EC 2.7.1.12) from Burkholderia phytofirmans PsJN
PFams: AAA_33, SKI
165 amino acids: PaperBLAST, CDD, Compare to cluster

RR42_RS06130 Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis 4G11
PFams: AAA_33, SKI
169 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (1/1 heteromeric)

Psest_2123 fusion of gluconokinase and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri RCH2
PFams: AAA_33, SKI, DctQ
Heteromeric, 376 amino acids: PaperBLAST, CDD