Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clustering the characterized proteins for glucosaminate-lyase (glucosaminate ammonia-lyase) in D-glucosamine (chitosamine) catabolism

Definition of glucosaminate-lyase

Curated proteins or TIGRFams with EC 4.3.1.9
Ignore hits to Q93HX6 when looking for 'other' hits (Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9. glucosaminate ammonia-lyase (EC 4.3.1.9))
Comment: A purified glucosaminate dehydratase "alpha subunit" was determined to be thioredoxin (SwissProt Q93HX6), which seems unlikely to physiologically relevant.

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

The first sequence in each cluster is the seed.

PS417_12125 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas simiae WCS417
A0A1N7U313 glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas simiae
PFams: Ala_racemase_N, D-ser_dehydrat
402 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_2867 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens GW456-L13
PFams: Ala_racemase_N, D-ser_dehydrat
405 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_21740 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens FW300-N2E3
PFams: Ala_racemase_N, D-ser_dehydrat
405 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_00450 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens FW300-N2C3
PFams: Ala_racemase_N, D-ser_dehydrat
405 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_2047 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens FW300-N2E2
PFams: Ala_racemase_N, D-ser_dehydrat
405 amino acids: PaperBLAST, CDD, Compare to cluster