GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for nagB (glucosamine 6-phosphate deaminase (isomerizing)) in D-glucosamine (chitosamine) catabolism

Or see other characterized proteins similar to nagB

Or see all steps for D-glucosamine (chitosamine) catabolism

Or cluster curated proteins matching a keyword

Definition of nagB

Fetched 25 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 21 of these sequences

Found 2 clusters of similar sequences. Another 4 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 182-289 amino acids (not heteromeric)

A3CLX4 glucosamine-6-phosphate deaminase subunit (EC 3.5.99.6) from Streptococcus sanguinis (strain SK36)
PFams: Glucosamine_iso
235 amino acids: PaperBLAST, CDD, Compare to cluster

b0678 glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli K-12 substr. MG1655
P0A759 glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli (strain K12)
NAGB_ECOLI / P0A759 Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli (strain K12)
NAGB_ECO57 / P0A760 Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli O157:H7
P0A759 glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli
PDB|1CD5 GlcN6P deaminase; EC 3.5.99.6 from Escherichia coli K12
PFams: Glucosamine_iso
266 amino acids: PaperBLAST, CDD, Compare to cluster

GNPI1_HUMAN / P46926 Glucosamine-6-phosphate isomerase 1; Glucosamine-6-phosphate deaminase 1; GNPDA 1; GlcN6P deaminase 1; Oscillin; EC 3.5.99.6 from Homo sapiens (Human)
P46926 glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Homo sapiens
PFams: Glucosamine_iso
289 amino acids: PaperBLAST, CDD, Compare to cluster

Q8TDQ7 glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Homo sapiens
PFams: Glucosamine_iso
276 amino acids: PaperBLAST, CDD, Compare to cluster

CH_123433 glucosamine-6-phosphate deaminase from Candida albicans
PFams: Glucosamine_iso
182 amino acids: PaperBLAST, CDD, Compare to cluster

GAMA_BACSU / O31458 Probable glucosamine-6-phosphate deaminase 2; GlcN6P deaminase 2; GNPDA 2; Glucosamine-6-phosphate isomerase 2; EC 3.5.99.6 from Bacillus subtilis (strain 168)
PFams: Glucosamine_iso
249 amino acids: PaperBLAST, CDD, Compare to cluster

NAGB_BACSU / O35000 Glucosamine-6-phosphate deaminase 1; GlcN6P deaminase 1; GNPDA 1; Glucosamine-6-phosphate isomerase 1; EC 3.5.99.6 from Bacillus subtilis (strain 168)
PFams: Glucosamine_iso
242 amino acids: PaperBLAST, CDD, Compare to cluster

GNPI1_MOUSE / O88958 Glucosamine-6-phosphate isomerase 1; Glucosamine-6-phosphate deaminase 1; GNPDA 1; GlcN6P deaminase 1; Oscillin; EC 3.5.99.6 from Mus musculus (Mouse)
PFams: Glucosamine_iso
289 amino acids: PaperBLAST, CDD, Compare to cluster

GNPI1_MESAU / Q64422 Glucosamine-6-phosphate isomerase 1; Glucosamine-6-phosphate deaminase 1; GNPDA 1; GlcN6P deaminase 1; Oscillin; EC 3.5.99.6 from Mesocricetus auratus (Golden hamster)
PFams: Glucosamine_iso
289 amino acids: PaperBLAST, CDD, Compare to cluster

NAGB_STRCO / Q9K487 Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
PFams: Glucosamine_iso
261 amino acids: PaperBLAST, CDD, Compare to cluster

O97439 glucosamine 6-phosphate isomerase 1 (EC 3.5.99.6) from Giardia intestinalis
PFams: Glucosamine_iso
266 amino acids: PaperBLAST, CDD, Compare to cluster

Shew_0815 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Shewanella loihica PV-4
PFams: Glucosamine_iso
268 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 332-363 amino acids (not heteromeric)

Shewana3_3113 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella sp. ANA-3
PFams: SIS, SIS
332 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS02735 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans PsJN
PFams: SIS, SIS
335 amino acids: PaperBLAST, CDD, Compare to cluster

CCNA_00453 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Caulobacter crescentus NA1000
PFams: SIS, SIS
363 amino acids: PaperBLAST, CDD, Compare to cluster

Ga0059261_1644 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis DSMZ 15582
PFams: SIS, SIS
347 amino acids: PaperBLAST, CDD, Compare to cluster

SO3506 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella oneidensis MR-1
PFams: SIS, SIS
332 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c27890 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Phaeobacter inhibens BS107
PFams: SIS, SIS
342 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_0945 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella amazonensis SB2B
PFams: SIS, SIS
332 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_4831 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens GW456-L13
PFams: SIS, SIS
340 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_04455 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens FW300-N2E3
PFams: SIS, SIS
336 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/4 heteromeric)

A0KYQ7 D-galactosamine-6-phosphate deaminase/isomerase from Shewanella sp. (strain ANA-3)
AGAS_SHESA / A0KYQ7 D-galactosamine-6-phosphate deaminase AgaS; GalN-6-P deaminase; Glucosamine-6-phosphate deaminase; GlcN-6-P deaminase; EC 3.5.99.-; EC 3.5.99.6 from Shewanella sp. (strain ANA-3)
PFams: SIS, SIS
386 amino acids: PaperBLAST, CDD

Q5JDU3 archaeal glucosamine-6-phosphate deaminase subunit (EC 3.5.99.6) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GLMD_THEKO / Q5JDU3 Glucosamine-6-phosphate deaminase; GlcN6P deaminase; EC 3.5.99.6 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
PFams: SIS, SIS
326 amino acids: PaperBLAST, CDD

Q92VI1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; EC=2.6.1.16
339 amino acids: PaperBLAST, CDD

CA265_RS21925 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Pedobacter sp. GW460-11-11-14-LB5
PFams: Glucosamine_iso, PIG-L
641 amino acids: PaperBLAST, CDD